Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ARHGDIB	397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	15095522	15095522	+	Silent	SNP	G	G	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	GCTTGTCATCGTCGGTGAAGA	0.567	63	161
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu	37	12	57423554	57423554	+	Silent	SNP	G	G	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	CCTTCTTCACGGCCTCTGCCA	0.587	16	191
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	99076871	99076871	+	Silent	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	AAAGAATCGGCGATGTCATGC	0.502	8	36
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40590542	40590542	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	CAGCACCTGGCGGTACATCTC	0.627	43	62
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	42178327	42178327	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	GCTTGGAGTGCTGTCTGTAGC	0.667	13	29
VPS25	84313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40926665	40926665	+	Splice_Site	SNP	A	A	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	TTAAACCAGGAAAGCTTCCTG	0.453	8	23
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42791715	42791715	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	GGACCACATCCGGCGGCCCAT	0.622	18	86
GPR25	2848	hgsc.bcm.edu;broad.mit.edu	37	1	200842872	200842872	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	CCGCACGTGGGTCGGGCCCGG	0.682	6	105
TPTE	7179	hgsc.bcm.edu;broad.mit.edu	37	21	10906911	10906911	+	Silent	SNP	G	G	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	ATACTTAATCGGATCCAGCTA	0.398	5	75
NOL12	79159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38087302	38087302	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	CAAGGCCCAGCGCCGCCGTCT	0.632	24	45
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	ATAAGCATGACGACCTATGAT	0.393	23	27
AARS2	57505	hgsc.bcm.edu;broad.mit.edu	37	6	44270856	44270856	+	Silent	SNP	C	C	T			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	AGGCTGGGTCCAATGCATGGG	0.627	6	90
RAB33A	9363	hgsc.bcm.edu;broad.mit.edu	37	X	129306042	129306042	+	Silent	SNP	G	G	A			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	GGGAGATGGCGCAGCCCATCC	0.692	17	34
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	149638921	149638921	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	ccaccacccccaTTCAGCCCC	0.612	45	174
G6PD	2539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153762634	153762634	+	Missense_Mutation	SNP	G	G	A	rs5030868	byFrequency	TCGA-HT-7877-01A-11D-2395-08	TCGA-HT-7877-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	a6dc115c-4c2c-4f45-bc8b-09bb9562cdce	44355458-1ec3-4e6b-bae8-e1a7642e03ce	GAACAGGGAGGAGATGTGGTT	0.632	46	112