Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SPATA5L1 79029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45713342 45713342 + Silent SNP C C T TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CGTTAAGTTGCAAGGACTTGG 0.353 8 24 SEZ6L2 26470 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 29897045 29897045 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac GGGGATAGGGGGCTGCCCCCT 0.602 18 87 MYH3 4621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10533673 10533673 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TCATCTAGACGATGCTGCAGG 0.607 21 187 SCN4A 6329 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 62043903 62043903 + Splice_Site SNP C C T TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac AGTAGAAGTTCCCTTTGGGAG 0.582 10 46 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42798840 42798840 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac GACCAGCGCCGGGCCCTGGTC 0.612 18 82 MAST2 23139 hgsc.bcm.edu;broad.mit.edu 37 1 46497240 46497240 + Nonsense_Mutation SNP C C A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac ACAGCCCTCTCACTCCTCATT 0.607 3 49 GBP5 115362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 89730624 89730624 + Silent SNP A A G TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TGGCATTGACATAGGTCAGCA 0.448 37 23 ASXL2 55252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 25972673 25972673 + Silent SNP C C T TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TGACACGTGGCCTCTTCTCCC 0.532 9 31 OTOF 9381 hgsc.bcm.edu;broad.mit.edu 37 2 26688556 26688556 + Missense_Mutation SNP C C T TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TAGGTCTGGGCGATGCCGCAG 0.582 7 148 ARHGEF4 50649 hgsc.bcm.edu;broad.mit.edu 37 2 131797874 131797874 + Missense_Mutation SNP G G A rs117266463 by1000genomes TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac GACATGTTCAGCGAGGAGCAG 0.682 4 57 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac ATAAGCATGACGACCTATGAT 0.393 26 61 ITIH1 3697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52812973 52812973 + Silent SNP C C T rs151186293 byFrequency TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CAGATGGAAACGCATTTATCG 0.547 24 81 CNR1 1268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 88854091 88854091 + Silent SNP A A G TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CGTGGCTGTGAGCCTTCCAGA 0.537 11 84 CASP8AP2 9994 hgsc.bcm.edu;ucsc.edu 37 6 90573819 90573819 + RNA SNP G G C rs3799895 by1000genomes TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CACTGGTTGAGAGTAAGTCGT 0.408 24 92 CDK19 23097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 110953281 110953281 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TCTGGAGCCCGATACCAAAAT 0.358 11 105 LRRCC1 85444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 86049720 86049720 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac GCCCAAAATCGTGGAAAATTG 0.333 21 34 CORO2A 7464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 100897160 100897160 + Silent SNP C C T rs147316581 by1000genomes TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CTACTCTGCGCGCGTGGCCCA 0.602 31 49 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 134455699 134455699 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TGCTGCCACCGCTTGGAGAAG 0.632 29 54 FIGF 2277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 15365420 15365420 + Silent SNP A A G TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CACACTCGCAACGATCTTCGT 0.473 14 133 HEPH 9843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 65427079 65427079 + Silent SNP T T A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac GGCTCCTGGGTTCCAGATACA 0.463 9 41 ZCCHC12 170261 hgsc.bcm.edu;broad.mit.edu 37 X 117959418 117959418 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac agtcaatggcgtcctgccaga 0.557 6 106 SLC35G5 83650 broad.mit.edu;ucsc.edu 37 8 11189480 11189480 + Missense_Mutation SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac CCTGCATTCCGAGGTGGTTGT 0.582 41 198 RLTPR 146206 broad.mit.edu;ucsc.edu 37 16 67688719 67688719 + Silent SNP A A G TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac AACTGGCTCCATCCTTTGAAC 0.622 59 170 SHROOM2 357 broad.mit.edu;ucsc.edu 37 X 9905237 9905237 + Silent SNP G G A TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac TCGTGCACTCGGAGAGCCAGC 0.587 4 17 HEATR5B 54497 broad.mit.edu;ucsc.edu 37 2 37268386 37268386 + Missense_Mutation SNP G G C TCGA-HT-7695-01A-11D-2253-08 TCGA-HT-7695-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 86386b36-2950-4479-b79f-4b347053c8bc 04911942-c9a9-473f-93d5-79c0c14944ac AAACAACCAAGAGCCAATGAA 0.418 33 59