Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count GLUD1 2746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 88835744 88835744 + Missense_Mutation SNP A A C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CTTGGGATTGATCTTAACACC 0.353 27 181 H3F3C 440093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 31944718 31944718 + Missense_Mutation SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CCGTATCCGGCGAGCCAACTG 0.443 35 197 PDP2 57546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 66919405 66919405 + Silent SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AGGATAAGTTCCTTGTGCTGG 0.567 41 106 RBBP8 5932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 20602227 20602227 + Nonsense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GACTTGTATGGAAAGAGGTGA 0.418 29 112 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 79383689 79383689 + Missense_Mutation SNP G G C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TGCAAAAGCAGCTAAAAAGAA 0.333 15 133 CENPF 1063 hgsc.bcm.edu;ucsc.edu 37 1 214794279 214794279 + Silent SNP G G A rs114104425 byFrequency TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AATTAAAAGCGCAGAATCAAG 0.343 20 96 FAM217B 63939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 58520040 58520040 + Missense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a ACAAGCACATGCACATCCTAG 0.458 22 93 RNF144A 9781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 7164513 7164513 + Missense_Mutation SNP A A G TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TGCTTTCAAAATGGAAGAAGA 0.567 21 81 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 15523366 15523366 + Silent SNP T T C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AATCTAGACATGTGTATACAT 0.348 40 121 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21230343 21230343 + Missense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CGCATTTCAGGAATTGTTAAA 0.373 37 152 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a ATAAGCATGACGACCTATGAT 0.393 33 114 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 230723871 230723871 + Missense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GGTAGGTTTCGCAGATCTCTC 0.507 24 49 FBLN2 2199 hgsc.bcm.edu;broad.mit.edu 37 3 13679124 13679124 + Missense_Mutation SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GCGCGCATCACGCACTACCAG 0.657 8 95 C3orf35 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 37458938 37458938 + Missense_Mutation SNP A A G TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CCTGCAGGGCAGTGCTCAGCA 0.463 30 98 RFT1 91869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 53126463 53126463 + Silent SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CAGCCAGGGGCCTGTGGGGGC 0.592 7 12 TMEM14E 645843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 152058574 152058574 + Silent SNP A A G TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AGAATCCAGCAGAAGGGGACT 0.488 30 99 GNRHR 2798 hgsc.bcm.edu;broad.mit.edu 37 4 68606313 68606313 + Nonsense_Mutation SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AGGATCAAACCAATACCAAAT 0.403 20 309 PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 67589138 67589138 + Missense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CAGGAAAGGGGGAAATAACAA 0.308 11 72 TREML2 79865 hgsc.bcm.edu;broad.mit.edu 37 6 41165998 41165998 + Silent SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GCAAGTAGCGGGGCCCTTTCA 0.572 12 214 SLC35A1 10559 hgsc.bcm.edu;broad.mit.edu 37 6 88187186 88187186 + Silent SNP C C G TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a ACAAAGAACTCTACTTTTCAA 0.358 8 130 COQ3 51805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 99817516 99817516 + Missense_Mutation SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a ATTGGTGCAGGCATTAGCTTG 0.403 52 234 FUCA2 2519 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 143823670 143823670 + Missense_Mutation SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AGCTCCCCAACGATCATTGGT 0.403 16 160 MYL10 93408 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 101267513 101267513 + Missense_Mutation SNP C C T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GCTGGCGGTGCCTTCTGCTCT 0.587 28 84 OLFML2A 169611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 127572530 127572530 + Missense_Mutation SNP T T C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CCAGGTCGCCTACGCTTTCGA 0.637 21 71 VDAC2 7417 broad.mit.edu;ucsc.edu 37 10 76980618 76980618 + Silent SNP G G A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TTGGTTATGAGGGCTGGCTTG 0.468 12 45 HAUS4 54930 broad.mit.edu;ucsc.edu 37 14 23416936 23416936 + Missense_Mutation SNP A A C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GCAGCGGAGAAGCACCTGAGC 0.507 28 92 TSC22D4 81628 broad.mit.edu;ucsc.edu 37 7 100064672 100064672 + Silent SNP G G T TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TGGCCAGGGCGCGCAGCAGCC 0.697 3 23 KIAA1024 23251 broad.mit.edu;ucsc.edu 37 15 79748620 79748620 + Missense_Mutation SNP C C A TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TCGCAGCTTGCCAAACTGAGA 0.468 37 118 AGO1 26523 broad.mit.edu;hgsc.bcm.edu 37 1 36359738 36359739 + Frame_Shift_Del DEL CT CT - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CCCTCACGGACTCTCAGCGCGT 0.55 11 49 FUBP1 8880 broad.mit.edu;hgsc.bcm.edu 37 1 78422330 78422331 + Frame_Shift_Del DEL AT AT - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GCTGTTGATAATAGTGAGCGTA 0.431 36 72 CFH 3075 broad.mit.edu;hgsc.bcm.edu 37 1 196694339 196694341 + In_Frame_Del DEL CTC CTC - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a TGTTGAAATTCTCCTGCAAACCA 0.394 24 98 ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu 37 4 73963819 73963820 + Frame_Shift_Del DEL TC TC - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a AAACAGATTTTCTCTCTTCCTT 0.361 34 182 CLIP2 7461 broad.mit.edu;hgsc.bcm.edu 37 7 73795186 73795187 + Frame_Shift_Del DEL TG TG - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CGAAGGAAACTGTGGAGGGTGA 0.579 63 198 OTUB1 55611 broad.mit.edu;hgsc.bcm.edu 37 11 63764577 63764579 + In_Frame_Del DEL CCT CCT - TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a GACCTGCTGGCCTCCTTCAATGA 0.591 50 254 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42793443 42793444 + Frame_Shift_Ins INS - - C TCGA-HT-7694-01A-11D-2253-08 TCGA-HT-7694-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx d44bae99-4be5-4d02-a261-f341afb1ebff 83cb6500-9764-4d02-b833-e3c72c7d880a CCACTGGGCGGCCCCCGCTGCT 0.644 14 45