Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	96944967	96944967	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	TTCAACTATTTTGATGAACTT	0.478	43	60
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	by1000genomes	TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GGCACAAACACGCACCTCAAA	0.542	14	4
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10429940	10429940	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	CTCCTCTGTGCGCTGGATGGC	0.512	61	195
TUBG1	7283	hgsc.bcm.edu;broad.mit.edu	37	17	40767042	40767042	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	CATCTCCTGGGGCACCCAGGA	0.582	4	42
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	3342279	3342279	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	AACCTGGACCGGCACCTCAAG	0.662	16	156
SLC16A4	9122	hgsc.bcm.edu;ucsc.edu	37	1	110921952	110921952	+	Missense_Mutation	SNP	C	C	T	rs35157487	byFrequency	TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	AAATTCAATGCGATAGCTCCA	0.378	16	45
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	ATAAGCATGACGACCTATGAT	0.393	38	63
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	155200712	155200712	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GTAGATACAATGGTGTCCCCT	0.458	41	69
ANXA10	11199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	169105805	169105805	+	Silent	SNP	T	T	C			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	AAGAGCGATATGGAAAATCCC	0.353	57	96
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	23526872	23526872	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GGAGTGTGGGCGGGGCTTTAG	0.527	31	92
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	45262356	45262356	+	Silent	SNP	G	G	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	TGACTTCCCGGGTCAGGTTGG	0.632	21	42
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	54577281	54577281	+	Silent	SNP	G	G	C			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	TTGTACAATAGAGTAACCTGG	0.393	40	65
UNC5CL	222643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	40996311	40996311	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GGCCGCTGCGGGGCTGCGCTG	0.672	34	79
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	24201057	24201057	+	Silent	SNP	A	A	G			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GTGAGGAAGGATGGATCCCTC	0.498	34	66
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	110408325	110408325	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	AGTGGGCGTTTCTTTGATCAG	0.403	12	16
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144941387	144941387	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	ACCCCCCGTGGCCACCTGCAC	0.627	15	22
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	50055581	50055581	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	GTGATCCAAGTTTCAACCCAA	0.383	23	156
UBAP1	51271	broad.mit.edu;ucsc.edu	37	9	34250662	34250662	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	TTAGATTCTCGACTATCTCTT	0.468	19	35
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76920224	76920224	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HT-7686-01A-11D-2253-08	TCGA-HT-7686-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	22530a76-c1dd-4ff9-8503-ffcce2eeda5a	5cd72590-fbad-4fde-a315-5b5862bdddbf	TCATCAGAGGAAAGATTGGCT	0.373	13	50