Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	37419199	37419199	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TATAAATCTCGTAGATGTGTA	0.423	10	43
FOXM1	2305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	2968215	2968215	+	Silent	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TGGCTGGGGGCGTGAGCCTCC	0.592	22	105
USP30	84749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	109519737	109519737	+	Splice_Site	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TCATGCTGTAGGGTCACCCAT	0.428	31	128
CYP1A2	1544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	75042314	75042314	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	CCTGCAGATCCGCATTGGCTC	0.672	15	39
USP31	57478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	23080559	23080559	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	GTTCAATCTGCGGGTGTCCGA	0.552	16	150
PRSS54	221191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58324928	58324928	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	CGAAAGCCAGGTGTGTGTACT	0.607	18	76
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78429792	78429792	+	Nonsense_Mutation	SNP	A	A	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	CAGCATGTTGACATCGGTCTG	0.328	29	99
CFH	3075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	196648911	196648911	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	GCGTCCGTTGCCTTCATGTGA	0.294	6	34
CNST	163882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	246810446	246810446	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TTTAGAGAGTAAAACTTGTCT	0.388	14	42
CCT7	10574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	73478419	73478419	+	Nonsense_Mutation	SNP	C	C	G			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TGCGGGATTACTCAAGGACTA	0.517	30	95
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	ATAAGCATGACGACCTATGAT	0.393	16	70
SRD5A1	6715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	6663021	6663021	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TGTCCAAGGCGCGGCTTTTGC	0.408	25	84
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	153175109	153175109	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	CAAATGGTGGTACGATAAAGG	0.473	10	51
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	176825109	176825109	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TTCCTGCCTCGCTGGATGCAC	0.667	21	70
SCAND3	114821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	28540669	28540669	+	Silent	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	gatgaatgaagcaatgtgttg	0.328	19	87
TFAP2B	7021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	50807962	50807962	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	CGGCAGCACACAGACCCGAGT	0.517	12	87
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	129823889	129823889	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	ATTGCAATTGCATTTGATGAC	0.408	9	49
CLIC2	1193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	154508571	154508571	+	Nonsense_Mutation	SNP	A	A	C			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TGGGGTGTTTAAGTAGTCATC	0.408	20	16
CAMK2D	817	broad.mit.edu;ucsc.edu	37	4	114436309	114436309	+	Silent	SNP	G	G	A			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TGAGGTCTTTGGCTTCAGGAG	0.398	16	70
DHX35	60625	broad.mit.edu;ucsc.edu	37	20	37634881	37634881	+	Silent	SNP	C	C	T			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	TCCGAGCCTACAATCCCAGGA	0.522	65	263
PIK3CA	5290	broad.mit.edu	37	3	178916938	178916940	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HT-7620-01A-11D-2253-08	TCGA-HT-7620-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3e2dba25-2fc2-4f3b-90f0-663e1576a6bf	1f1dbf44-a66f-478b-9efa-9e76ca91f4bc	AGGCAACCGTGAAGAAAAGATCC	0.34	9	38