Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CDC42BPG 55561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 64603009 64603009 + Missense_Mutation SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TCTCGCAGGGCGGCCACCTCC 0.692 14 132 STOML3 161003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 39564828 39564828 + Nonsense_Mutation SNP G G A rs147878470 TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TCTTTATCTTGCTTCTCAGGT 0.388 20 87 CHRM5 1133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 34356257 34356257 + Missense_Mutation SNP A A G TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f ACTGAGTGCCATTCTCCTGGC 0.512 35 67 CASC5 57082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 40915064 40915064 + Missense_Mutation SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TTCAGAAGACGATAAGAATGA 0.333 10 92 GPRC5B 51704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 19883181 19883181 + Silent SNP G G C TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TCTCCATATAGGCCCGCGGCA 0.597 9 87 GPRC5B 51704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 19883826 19883826 + Silent SNP G G T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f CCTCCTGGATGATGAAGGCAA 0.612 5 27 CHD9 80205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 53348818 53348818 + Missense_Mutation SNP T T A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GAATTCCTGATACAGAAAGTC 0.398 14 87 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577081 7577081 + Missense_Mutation SNP T T C TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GAGATTCTCTTCCTCTGTGCG 0.562 49 22 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578266 7578266 + Missense_Mutation SNP T T A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TCCACTCGGATAAGATGCTGA 0.557 4 47 FCGBP 8857 hgsc.bcm.edu;broad.mit.edu 37 19 40366226 40366226 + Missense_Mutation SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GCGGAGATCACGCCGCAGGCG 0.726 20 74 ATAD3C 219293 hgsc.bcm.edu;broad.mit.edu 37 1 1396282 1396282 + Missense_Mutation SNP C C A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f CTTAAGCCGGCCACAGAAGGA 0.627 7 40 RNF19B 127544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 33402666 33402666 + Missense_Mutation SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GCTGGCCAGGCAGTCTTTCTG 0.547 61 88 LCE3C 353144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152573380 152573380 + Missense_Mutation SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f AGCCACCACAGGCACTTCAGG 0.642 74 9 SNAPIN 23557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 153633756 153633756 + Silent SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GAATTTACCCCCCTGGCTCCC 0.507 8 38 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179417788 179417788 + Nonsense_Mutation SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f ACTGTGCCTCGAGAAACATGT 0.423 8 43 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G C rs121913499 TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TAAGCATGACGACCTATGATG 0.398 26 54 AGAP1 116987 hgsc.bcm.edu;broad.mit.edu 37 2 236626276 236626276 + Nonsense_Mutation SNP G G T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TGTCCAGGAGGAGTCTCCGGA 0.448 16 57 AGAP1 116987 hgsc.bcm.edu;broad.mit.edu 37 2 236626277 236626277 + Missense_Mutation SNP A A C TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GTCCAGGAGGAGTCTCCGGAA 0.448 16 57 PLEKHG4B 153478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 161918 161918 + Silent SNP A A G TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f AGAAAGGACTACAGCTGGCGA 0.582 11 46 KIAA0319 9856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 24566850 24566850 + Missense_Mutation SNP C C A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f CTGGCCATCCCGGATCCACAG 0.463 39 64 EPHB6 2051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142568143 142568143 + Silent SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TGCAGGCTGGCGGGGACCCAG 0.582 28 112 AOC1 26 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150556078 150556078 + Missense_Mutation SNP A A G TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GATCCACTCCATGGCCGACCA 0.647 6 14 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 77377091 77377091 + Missense_Mutation SNP A A G TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GTTATCAGATAGGGAGCTGTC 0.507 17 127 OR1Q1 158131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 125377695 125377695 + Missense_Mutation SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GGTGGTCCTCCGGATCCCCTC 0.537 34 130 BCOR 54880 hgsc.bcm.edu;broad.mit.edu 37 X 39932880 39932880 + Silent SNP G G T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TGGCATTGGGGGCGGGTGATG 0.617 4 48 RP11-24M17.5 0 broad.mit.edu;ucsc.edu 37 15 76067993 76067993 + RNA SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f ACTCAACAGAGTAAATTGGCA 0.532 6 32 HIST1H4C 8364 broad.mit.edu;ucsc.edu 37 6 26104327 26104327 + Missense_Mutation SNP T T C TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TCCGGTCTTATCTATGAGGAG 0.542 10 51 ABO 28 broad.mit.edu;ucsc.edu 37 9 136131727 136131727 + RNA SNP T T C TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f AGGAACAGCTTCAGGAAAGCC 0.701 36 45 HAPLN1 1404 broad.mit.edu;ucsc.edu 37 5 82937364 82937364 + Missense_Mutation SNP T T A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f ATGCTTTTTATCTGGGAAACC 0.517 9 178 CYP4F8 11283 broad.mit.edu;ucsc.edu 37 19 15734031 15734031 + RNA SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TGTGGACGGCGCTTCCACAGG 0.562 47 50 IFI35 3430 broad.mit.edu;ucsc.edu 37 17 41166236 41166236 + Missense_Mutation SNP G G A TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f GCCCACCCGCGGGGGCGGGGA 0.622 39 32 FOXM1 2305 broad.mit.edu;hgsc.bcm.edu 37 12 2983282 2983283 + Frame_Shift_Del DEL GA GA - TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f TTTGAGGCCGGAGTCCTGGAGG 0.54 27 119 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938601 76938605 + Frame_Shift_Del DEL AATTT AATTT - TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f AGATTTTGGCAATTTATTAGGCTTA 0.361 25 117 ARID1A 8289 broad.mit.edu 37 1 27056286 27056286 + Nonsense_Mutation SNP C C T TCGA-HT-7611-01A-11D-2395-08 TCGA-HT-7611-10B-01D-2396-08 Untested Somatic Phase_I WXS none Illumina GAIIx b60b581b-2e7d-4c89-af6f-2de8cf79bcd7 cbdff4de-7729-4d99-b9be-f4807a99630f CCAGACCCCGCAGCGGTACCC 0.607 11 81