Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	94901781	94901781	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	GACAGGATGGGCATTTTGGAC	0.453	16	27
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7250531	7250531	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	CTTGGTGTCACCCTCTGCATT	0.642	28	15
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	GGCACCACCACACTATGTCGA	0.537	19	4
MYH10	4628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	8424575	8424575	+	Silent	SNP	G	G	A			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	TCATACCAGTGACTTGATCCA	0.463	33	65
SEMA6B	10501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	4556083	4556083	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	AGCACCTTTACGAAGTTTCGA	0.607	6	33
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170093662	170093662	+	Missense_Mutation	SNP	T	T	C	rs140722973	by1000genomes	TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	AGGTTTTTACTAATCAGCACA	0.383	43	67
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	ATAAGCATGACGACCTATGAT	0.393	18	37
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	85612906	85612906	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	CCTTTATCTGTACATACGATT	0.388	22	39
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	43403556	43403556	+	Missense_Mutation	SNP	A	A	G	rs114002465	by1000genomes	TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	TGGGTGATCAATGGTCTCCTG	0.572	26	44
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	63990506	63990506	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	ATCCCAGAGACTATGAGACAA	0.433	22	41
TRIP6	7205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	100469261	100469261	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	CTTCACCTGCGTGGTGTGTCA	0.632	21	50
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76940489	76940489	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	ATGTAATACTTAAAGCAATTC	0.284	49	8
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	135432487	135432487	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	TACAGCAACTGTGTCTTCACC	0.453	5	58
SMARCA4	6597	ucsc.edu	37	19	11141491	11141491	+	Silent	SNP	C	C	T			TCGA-HT-7485-01A-11D-2024-08	TCGA-HT-7485-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28d430d8-4932-45cf-b3c8-68c71b66f791	316fe91a-955f-4b60-ad58-0aa32781a502	TGCTCAGCACCCGGGCTGGGG	0.617	1	16