Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KIAA1462	57608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	30316584	30316584	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	ACTGACTGATCAAATCCCAGG	0.557	15	106
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1477653	1477653	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GGGGCCAGCCGTGTTCCAGAA	0.612	9	11
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	85255483	85255483	+	Silent	SNP	A	A	G			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GTCCATTGGGAGCAGTATCCA	0.423	9	129
SRL	6345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	4242361	4242361	+	Silent	SNP	G	G	A			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GATTGATGCCGAAGAAGTCCT	0.493	25	39
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578475	7578475	+	Missense_Mutation	SNP	G	G	A	rs137852790		TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GGTGCCGGGCGGGGGTGTGGA	0.612	17	29
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499		TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	TAAGCATGACGACCTATGATG	0.398	19	53
DPPA4	55211	hgsc.bcm.edu;broad.mit.edu	37	3	109049418	109049418	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	CCTCGCCCTGGCTGAAATTCT	0.522	5	57
PLXNA1	5361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	126732904	126732904	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	TGCCAGTGAACCTGTCAGTCG	0.632	28	120
KHDRBS2	202559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	62611243	62611243	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GATAATTCACGTAGTTGTTCC	0.418	17	26
SLC2A12	154091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	134350799	134350799	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	AAGTTCATAACCCACCAGGAG	0.517	6	34
VPS41	27072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	38796519	38796519	+	Silent	SNP	G	G	A	rs146405914		TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	ACTGAAAAACGTCTTTATGTC	0.284	10	22
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	116381017	116381017	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	CAAATGTGTGCGATCGGAGGA	0.512	20	86
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	134256364	134256364	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	AGACTGGGGATGACTTTTTCC	0.423	13	74
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76849221	76849221	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	AGTACCATTTTCCCAGAATGC	0.363	20	62
RBM41	55285	broad.mit.edu;ucsc.edu	37	X	106310757	106310757	+	Nonstop_Mutation	SNP	C	C	A			TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	TATATATATTCTAGCTACCAC	0.378	43	161
TP53	7157	broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7482-01A-11D-2024-08	TCGA-HT-7482-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	020cf1f1-cb63-4fe4-ac2f-ed85153dba6b	a9c741fd-ede2-4d99-8145-f2e1020b12d9	GCACAAACACGCACCTCAAAG	0.542	8	19