Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR52B6 340980 hgsc.bcm.edu;broad.mit.edu 37 11 5602531 5602531 + Missense_Mutation SNP A A G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TTTGACCGCTATGTGGCCATC 0.512 52 82 OR8I2 120586 hgsc.bcm.edu;broad.mit.edu 37 11 55861581 55861581 + Silent SNP G G A TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 ACACATCATCGCTGACCCAGG 0.468 7 94 MYLK3 91807 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 46766546 46766546 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 AGCATCTCCCCAGGAGTATCC 0.607 8 12 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577142 7577142 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 CTGTTCCGTCCCAGTAGATTA 0.517 17 4 EIF4A3 9775 hgsc.bcm.edu;broad.mit.edu 37 17 78117984 78117984 + Missense_Mutation SNP C C G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 GCGATGACATCTCTCCCTTTG 0.473 5 70 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 150531779 150531779 + Missense_Mutation SNP G G A TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TCCGAATGTGGCTCTGGCACA 0.592 9 66 RPS6KC1 26750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 213414640 213414640 + Silent SNP T T C TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 ACAGTAAGGATAGCGCAAGTG 0.408 19 63 NCOA3 8202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 46267764 46267764 + Nonsense_Mutation SNP C C G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TTGAAAAGTTCACAGTCTGTG 0.388 47 74 POLR3H 171568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 41936719 41936719 + Silent SNP G G A TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TGTGTGATGCGCCATCCCCAG 0.502 31 73 WNT7A 7476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 13860812 13860812 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TCCTTGAGCACGTAGCCCAGC 0.587 13 63 OSBPL10 114884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 31725264 31725264 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 ACTTGCTCAGCCACAAACCTT 0.527 10 99 MYH15 22989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108216948 108216948 + Missense_Mutation SNP A A G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 AAAATACTGGATAATATGTTT 0.403 67 113 MED28 80306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 17616285 17616285 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 AACATGGCGGCTCCACTAGGG 0.652 16 26 F13A1 2162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 6145947 6145947 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TTCCGATGCCCAGAGACCCAG 0.547 19 85 VDAC3 7419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 42257212 42257212 + Missense_Mutation SNP C C T TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 ATATTTGTACCGAACACAGGG 0.338 15 32 GAPVD1 26130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 128124938 128124938 + Silent SNP T T C TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 GCTTTTATGCTAGCTGTCTGT 0.418 55 100 ANGPTL2 23452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 129854133 129854133 + Silent SNP C C G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 CCATGGTCACCAGGAGTTTGT 0.552 97 210 BCOR 54880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 39934221 39934221 + Silent SNP C C G TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 CGGGTGTATTCGGTTTGAACT 0.507 15 11 IDH1 3417 broad.mit.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 ATAAGCATGACGACCTATGAT 0.393 27 45 MKLN1 4289 broad.mit.edu;hgsc.bcm.edu 37 7 131113796 131113799 + Frame_Shift_Del DEL TGTT TGTT - TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 TCATAGAGACTGTTTATTTGTTTG 0.402 20 49 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76937477 76937480 + Frame_Shift_Del DEL TCTC TCTC - TCGA-HT-7472-01A-11D-2024-08 TCGA-HT-7472-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 829d4bf0-c9c6-4cec-a549-6c8731d3e5c0 e9d41667-1202-4755-a988-b26f4a334717 CACCTTTTCTTCTCTCTACCATAT 0.377 114 74