Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR5A1 219982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 59211138 59211138 + Missense_Mutation SNP T T C TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 GCCAGCTCCATATTTAGGCTT 0.542 49 348 CHRM1 1128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62677198 62677198 + Nonsense_Mutation SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TATCAGCATTGGCGGGAGGGA 0.682 19 109 AKAP3 10566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 4737521 4737521 + Missense_Mutation SNP C C T rs140759485 TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CATGCAGAGACGGTCTCATTC 0.478 25 128 AP1G2 8906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24035874 24035874 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CTGGAGGAGGCGATCAGTTTC 0.527 20 121 SLC43A2 124935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 1516558 1516558 + Silent SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AGATGAGCACGGAGAGAGCTG 0.552 5 26 LAMA3 3909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 21364088 21364088 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TGATACCTGCCGCTCTGGTTT 0.498 26 187 OR2Z1 284383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8841797 8841797 + Missense_Mutation SNP T T C TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CCTGTACTTATGAGACGCCAG 0.547 26 109 RYR1 6261 hgsc.bcm.edu;broad.mit.edu 37 19 39055678 39055678 + Missense_Mutation SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CTCTTCGTGAGTTTCTGCGAG 0.657 4 1 PADI2 11240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 17413096 17413096 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AGGCCTTCCACGAAGAACAGC 0.617 13 70 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78435640 78435640 + Nonsense_Mutation SNP A A C TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TTTGTCCCCCATAACCATAGT 0.303 15 41 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78435643 78435643 + Silent SNP A A C TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 GTCCCCCATAACCATAGTCAT 0.308 15 42 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 186863284 186863284 + Missense_Mutation SNP T T G TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 GACAGCAACATTTACTGTATC 0.333 26 57 EPHX1 2052 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 226032903 226032903 + Missense_Mutation SNP C C T rs45495897 byFrequency TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CTATTGCACACGCCTGAAAAG 0.567 11 88 TRIM58 25893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 248028032 248028032 + Missense_Mutation SNP G G A rs147592698 by1000genomes TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CAGAGGCAGCGCTTCAGATTG 0.592 7 33 TMEM189 387521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 48700714 48700714 + Silent SNP T T C TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TTGTTACAAATCTTACAAAGG 0.358 23 120 CTSZ 1522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 57576621 57576621 + Missense_Mutation SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 ACAGGAGCCAGCGTTACCGCA 0.602 11 61 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 ATAAGCATGACGACCTATGAT 0.393 10 72 SLCO4C1 353189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 101592891 101592891 + Missense_Mutation SNP G G A rs145600550 TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AAAACTCAGCGTAAGTGCAAC 0.353 6 49 GPR110 266977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 46977421 46977421 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CATTTTACAACGGGGAAGATT 0.428 9 87 UBR5 51366 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 103297901 103297901 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TAGGTAACTGCTGGCGTTGCT 0.463 20 82 ENPP2 5168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 120628508 120628508 + Missense_Mutation SNP T T A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AACTTACCGGTTGACCTCCCC 0.378 11 77 FAM154A 158297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 18928829 18928829 + Missense_Mutation SNP C C T rs117915008 by1000genomes TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CGCTTCTCCACGGGGTGGGCC 0.507 16 81 ANKRD30A 91074 broad.mit.edu;ucsc.edu 37 10 37442521 37442521 + Missense_Mutation SNP C C A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 GACTGTTTCACAGAAGGATGT 0.274 17 106 SLC30A8 169026 broad.mit.edu;ucsc.edu 37 8 118170064 118170064 + Missense_Mutation SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 TTCCAGCTGCGCAGTGGCGGC 0.527 18 92 PCSK2 5126 broad.mit.edu;ucsc.edu 37 20 17339014 17339014 + Nonsense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CCGAAAAAAGCGAGGTTACAG 0.398 7 57 DOCK5 80005 broad.mit.edu;ucsc.edu 37 8 25181376 25181376 + Missense_Mutation SNP C C T TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AGAGATAAATCGGAGCGAGCA 0.532 5 12 REM2 161253 broad.mit.edu;ucsc.edu 37 14 23354154 23354154 + Silent SNP G G A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 AGAGCGGCGTGGGCAAGAGCA 0.607 15 54 AGO1 26523 broad.mit.edu;hgsc.bcm.edu 37 1 36379854 36379855 + Frame_Shift_Ins INS - - A TCGA-HT-7467-01A-11D-2024-08 TCGA-HT-7467-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 38f4e4b7-a4cc-4d87-bfd0-c4356d92086e 144f3ce7-40ba-4773-a950-e8d7ac5a0e49 CAGGGGATGGGAAAAAACCTTC 0.48 19 65