Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	108383673	108383673	+	Missense_Mutation	SNP	G	G	A			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	TTGAGTATCAGTCAGTGCAGA	0.403	50	148
CCDC60	160777	hgsc.bcm.edu;broad.mit.edu	37	12	119909950	119909950	+	Missense_Mutation	SNP	T	T	C			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	AGAAATCCACTATGGGGACAC	0.448	23	335
TPSAB1	7177	hgsc.bcm.edu;broad.mit.edu	37	16	1291161	1291161	+	Silent	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	CAGCCCCAGGCCAGGCCCTGC	0.716	4	54
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	1557307	1557307	+	Silent	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ATGCCACGTTCACACTGTGGG	0.517	58	247
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	C	T	rs121912660		TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	GCGCCGGTCTCTCCCAGGACA	0.542	18	27
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	47688737	47688737	+	Missense_Mutation	SNP	T	T	G			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	TCCTAACTCATCTGCCAGCCG	0.502	128	189
OR1M1	125963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9204306	9204306	+	Missense_Mutation	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ATCTGCCACCCATTGCACTAC	0.552	47	72
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	207930382	207930382	+	Missense_Mutation	SNP	T	T	C			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	GCCACCAACATTTGAAGCTAT	0.413	35	49
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	189927953	189927953	+	Missense_Mutation	SNP	A	A	G			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	TCTGATTCCTATGGAGCCTGG	0.512	52	88
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ATAAGCATGACGACCTATGAT	0.393	42	86
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	117019898	117019898	+	Missense_Mutation	SNP	G	G	C			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	AAGTTATACAGAAACCAGGAG	0.299	6	26
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	48390284	48390284	+	Missense_Mutation	SNP	T	T	C			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	CGCTGGACGCTTCCGTTTCTT	0.522	52	86
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	371468	371468	+	Missense_Mutation	SNP	G	G	A			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	TAAGCTCCCCGCTAAGCTCAC	0.418	60	80
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107821211	107821211	+	Silent	SNP	A	A	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	GACTTCCAGGACCTAAGGTAA	0.328	22	2
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	122758005	122758005	+	Missense_Mutation	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	TCCAGTTGCCCGTAATATGGT	0.328	35	5
OR51F2	119694	broad.mit.edu;ucsc.edu	37	11	4842846	4842846	+	Silent	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ACTATTTCCTCTCTATGCTTT	0.458	36	175
CEP44	80817	broad.mit.edu;ucsc.edu	37	4	175220324	175220324	+	Missense_Mutation	SNP	C	C	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ACAGGTGCTCCGCTTGCTAAA	0.358	41	43
NIPBL	25836	broad.mit.edu;hgsc.bcm.edu	37	5	37044565	37044565	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	ATCTAATGAAGCTCATCATCA	0.328	48	68
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7578474	7578475	+	Frame_Shift_Ins	INS	-	-	GG	rs137852790		TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	GGGTGCCGGGCGGGGGTGTGGA	0.614	44	91
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76855018	76855019	+	Frame_Shift_Ins	INS	-	-	T			TCGA-FN-7833-01A-11D-2086-08	TCGA-FN-7833-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b92a3aa1-9c8f-428d-bee4-7e91682da52a	39f82bc3-4c0e-4247-a89e-a5eea762150a	GAGCTACTATCTTTTTTCCCCT	0.356	204	94