Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TLL2 7093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 98129891 98129891 + Silent SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CCATGTAGTCGTAGCCGCAGT 0.667 11 84 OR5I1 10798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55703053 55703053 + Missense_Mutation SNP A A G TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CACTGAGATAATTTTATCAGT 0.408 16 29 LRRC55 219527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56949447 56949447 + Missense_Mutation SNP A A G TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GATTCCATGGACACAGTCCTC 0.607 11 64 CASP1 834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 104897057 104897057 + Missense_Mutation SNP A A C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GCGCTCTACCATCTGGCTGCT 0.393 8 84 CLEC12A 160364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 10131591 10131591 + Missense_Mutation SNP C C T rs141455664 byFrequency TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TCATGTATGGCGTCCAGCAGC 0.433 46 73 SRRM4 84530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 119592158 119592158 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AGAGACTCCCCGAGCCACCTG 0.632 18 19 NEMF 9147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 50269393 50269393 + Silent SNP A A C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GTACCTTAAAAAGGAAGCTAA 0.318 6 55 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 64683079 64683079 + Missense_Mutation SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TCCCCCTGCGTCCAGCACCCC 0.498 38 51 CHRNA5 1138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 78882881 78882881 + Missense_Mutation SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 ACTGAGAGTGGTAGTGGACCA 0.438 34 59 ABR 29 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 915191 915191 + Nonsense_Mutation SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TCCACACACTGCCGGACGATG 0.652 55 78 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577157 7577157 + Splice_Site SNP T T G TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AGATTACCACTACTCAGGATA 0.512 11 14 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577574 7577574 + Missense_Mutation SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GTTACACATGTAGTTGTAGTG 0.572 45 40 HS3ST3A1 9955 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 13400056 13400056 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GAGATGCGCGCGGGGGCCTCC 0.627 53 177 SH2D1B 117157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 162381781 162381781 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CTTGGTCAGACGTCCATGGTA 0.532 10 79 OR2M3 127062 hgsc.bcm.edu;broad.mit.edu 37 1 248366698 248366698 + Missense_Mutation SNP C C G TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CTGCTTGGCTCTGAGTGCTTT 0.458 22 300 SSTR3 6753 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37603530 37603530 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TAGGACAGGGCGTTCTGGGCG 0.622 54 80 MPPED1 758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 43898541 43898541 + Missense_Mutation SNP C C A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GGACTGGGTCCCCAAGAAGAT 0.632 17 158 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 ATAAGCATGACGACCTATGAT 0.393 16 53 SEC61A1 29927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 127786281 127786281 + Silent SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CTTCTGGGGGCCCAGCACGTG 0.483 59 111 PIK3R4 30849 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 130463923 130463923 + Missense_Mutation SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GACCAGGCCTTCTCGGTGCTT 0.408 18 42 TMEM155 132332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 122681459 122681459 + Missense_Mutation SNP T T A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 tcagacaatcttgcagatagc 0.403 16 31 HOXA7 3204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 27196035 27196035 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AAGGCGCCGGCGCCCGCCCCG 0.607 25 160 LETM2 137994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 38262000 38262000 + Silent SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AGCCCAAGCCGATTGAGATAC 0.557 11 67 XKR4 114786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 56436610 56436610 + Missense_Mutation SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GATTGAAGAATCAGTCATTAA 0.488 37 73 FAM154A 158297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 18928550 18928550 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GTGTAATGGGCCTGCACTGTT 0.547 52 68 ZNF81 347344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 47774744 47774744 + Silent SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 ACTCTTCTTATAGTCACCACG 0.363 9 85 GRIPAP1 56850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48831681 48831681 + Silent SNP C C G TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GGACGCTGCCCAGCCCGCTGC 0.607 22 40 RGAG4 340526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 71350423 71350423 + Missense_Mutation SNP C C T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GATGATATTTCGAACTCCAGG 0.493 66 129 CSTF2 1478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100077401 100077401 + Missense_Mutation SNP A A T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AACAAAGAAGAGCTGAAGAGT 0.418 21 48 DRP2 1821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 100490939 100490939 + Missense_Mutation SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GTCTGTTGGTGCCTCTGGACC 0.517 103 211 SERPINA7 6906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105280487 105280487 + Missense_Mutation SNP A A C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 GTCTTGAATTAGACCCACAAC 0.413 60 116 DOCK11 139818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 117773444 117773444 + Missense_Mutation SNP T T A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 AGACCGAAAATCGCAAACCAT 0.413 17 103 GPR112 139378 hgsc.bcm.edu;broad.mit.edu 37 X 135428469 135428469 + Silent SNP G G C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CAACAATGCTGGAAGTGACAG 0.398 22 251 NAA10 8260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153195616 153195616 + Missense_Mutation SNP T T C TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TCCACCTTGTTCTCGATGGCA 0.627 74 89 TAZ 6901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153640435 153640435 + Missense_Mutation SNP A A T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 TACATGAACCACCTGACCGTG 0.677 17 16 LATS2 26524 broad.mit.edu;ucsc.edu 37 13 21562142 21562142 + Missense_Mutation SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CTCTTGATGCGTGACTCTCTC 0.512 18 107 OGT 8473 broad.mit.edu;ucsc.edu 37 X 70776956 70776956 + Splice_Site SNP G G T TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CATTCATAAGGTACTACTGTT 0.368 4 33 CPZ 8532 broad.mit.edu;ucsc.edu 37 4 8603122 8603122 + Missense_Mutation SNP G G A TCGA-FG-A60J-01A-11D-A289-08 TCGA-FG-A60J-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 8317d01c-1f0a-4aac-9dfe-4f873da39278 d5887198-a47e-478b-8d13-db072d97b967 CTGCCAGCCCGCCTTCGACGC 0.677 5 10