Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count BMI1 648 hgsc.bcm.edu;broad.mit.edu 37 10 22618234 22618234 + Silent SNP A A G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 ATGCTGGAGAACTGGAAAGTG 0.483 4 50 PTPRJ 5795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48152190 48152190 + Missense_Mutation SNP A A G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GTTCCCTGGAACCAAGTATTG 0.428 11 13 A2M 2 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 9232315 9232315 + Missense_Mutation SNP A A C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CAGTACATAGATGTTAGGAGC 0.433 8 13 GPR133 283383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 131466566 131466566 + Missense_Mutation SNP C C T rs144030317 TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GCTGTATACGCGGGACAATTC 0.587 15 53 EIF4A1 1973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7481686 7481686 + Missense_Mutation SNP G G A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CGGTTTGGCCGTAAAGGTGTG 0.507 10 94 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578403 7578403 + Missense_Mutation SNP C C T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 ATGGTGGGGGCAGCGCCTCAC 0.652 26 19 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 51901156 51901156 + Missense_Mutation SNP C C A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 AAAAGGTGGACCTCACTCGCT 0.547 11 31 TMEM104 54868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 72791232 72791232 + Missense_Mutation SNP C C G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GTGCCCTTCTCCCTCATGCAG 0.567 8 28 TTN 7273 hgsc.bcm.edu;broad.mit.edu 37 2 179592490 179592490 + Missense_Mutation SNP T T C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TAAACCATTTTATTTTAAATG 0.413 8 98 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 ATAAGCATGACGACCTATGAT 0.393 8 24 ALPP 250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 233243710 233243710 + Missense_Mutation SNP C C T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CTTCTGGAACCGCGAGGCAGC 0.632 9 101 FANCD2 2177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 10083383 10083383 + Missense_Mutation SNP T T G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TGACCCAAACTTCCTATTGAA 0.438 13 29 EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 184042736 184042736 + Missense_Mutation SNP G G A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CGCTCTTTAGGGAATATCAAG 0.483 22 55 CPN2 1370 hgsc.bcm.edu;ucsc.edu 37 3 194062742 194062742 + Silent SNP C C T rs114433224 byFrequency TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GGGGCAGCTCCGAGATGTTGT 0.612 4 37 LETM1 3954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 1836604 1836604 + Missense_Mutation SNP C C T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TCTTTGGTGGCGCTGCCCTTG 0.547 13 93 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 125590681 125590681 + Missense_Mutation SNP T T C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TCAAATTCACTACTTGGTGAA 0.433 23 72 RWDD2A 112611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 83904244 83904244 + Missense_Mutation SNP A A G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 ATGTTTCCTAACCAAGGAGAA 0.443 8 17 PLEKHG1 57480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 151055100 151055100 + Missense_Mutation SNP T T C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GAGAGTGGACTCAAACGGGGC 0.587 13 41 PAPPA 5069 hgsc.bcm.edu;broad.mit.edu 37 9 119144692 119144692 + Missense_Mutation SNP T T A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GGGAGACAATTATTGTGATGC 0.527 9 99 VAV2 7410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136641200 136641200 + Silent SNP C C T rs150295787 TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GGCTGATGGGCGGCTGGTGGC 0.617 26 66 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 32456488 32456488 + Missense_Mutation SNP C C T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CTCTGAATGTCGCATCAAATT 0.363 7 13 MED12 9968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70341257 70341257 + Missense_Mutation SNP G G T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 AGGATGAATTGCTTAAACTGC 0.498 8 75 PAK3 5063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 110385328 110385328 + Silent SNP T T C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 CTTTAGCCAATAAGAAGAAGG 0.388 23 68 MAGEC2 51438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 141291734 141291734 + Missense_Mutation SNP T T C TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GGGGAGTCGTTGTCAACGTTG 0.522 18 107 DNM1P46 196968 broad.mit.edu;ucsc.edu 37 15 100331300 100331300 + RNA SNP G G A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 GCAAGTGGAGGTGTTCATCAG 0.592 49 55 SEMA3B 7869 broad.mit.edu;ucsc.edu 37 3 50313252 50313252 + RNA SNP G G T TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TTTCCAGCGCGCAGGGGTGAC 0.692 10 27 MBNL3 55796 broad.mit.edu;ucsc.edu 37 X 131520820 131520820 + Missense_Mutation SNP A A G TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 TATCAGTTGCAGTGTACCAGG 0.488 20 44 FAF2 23197 broad.mit.edu;hgsc.bcm.edu 37 5 175913383 175913384 + Frame_Shift_Ins INS - - A TCGA-FG-A4MY-01A-11D-A26M-08 TCGA-FG-A4MY-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx f6e09da5-6fae-4bec-a234-735728c4b4ad 494f3477-0516-47ea-beaf-572109ff74f8 ATTGAATGAGCAAGAGGGCGTA 0.485 10 53