Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LGI1	9211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	95557288	95557288	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	GTTCCAGGATATTCAGAGGAT	0.428	28	23
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu	37	10	105185105	105185105	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	ACAGGGACTGTCAAGTCCATT	0.502	6	77
CCNB2	9133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	59409442	59409442	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TGTTGAACAGCACACTTTAGC	0.423	12	46
BBS4	585	hgsc.bcm.edu;broad.mit.edu	37	15	73028230	73028230	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	GAAGAAGAACGCCCTGGCCCA	0.483	9	95
SLC35G6	643664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7385920	7385920	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	CTGTCCCTGGGGCTTCTGGTC	0.622	57	105
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578466	7578466	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	GCGGACGCGGGTGCCGGGCGG	0.612	83	13
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	43534467	43534467	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	AGTTGCTTCCTACATCGTGAG	0.423	43	45
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17845207	17845207	+	Silent	SNP	C	C	T			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TGCAGGATGACGCCTTCCCGG	0.632	23	56
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	47910360	47910360	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TGATCGATCATAGGTTGCACG	0.607	7	9
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38258980	38258980	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TTACAGGGGGGACCTTCCTTG	0.388	37	40
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	17699300	17699300	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TCCTGAAGCCCTCAAATCAGA	0.488	15	54
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	29222093	29222093	+	Silent	SNP	G	G	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	ACGAGGAACCGTCACAGCTCC	0.627	16	18
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	ATAAGCATGACGACCTATGAT	0.393	25	31
SLC6A20	54716	hgsc.bcm.edu;broad.mit.edu	37	3	45811778	45811778	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TAGGCAGATGCGAGGTAGCCC	0.522	4	67
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	117232112	117232112	+	Missense_Mutation	SNP	T	T	C	rs121908777		TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TGGGACATTTTCAGAACTCCA	0.338	34	36
FSCN3	29999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	127240376	127240376	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	CAATGGCTTCTACATGCGAGC	0.517	14	36
EXT1	2131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	118842536	118842536	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	TTGTGTCTGCTGTCTAAGTGC	0.378	20	10
FREM1	158326	hgsc.bcm.edu;broad.mit.edu	37	9	14805068	14805068	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	CCGTGAACTGGTCGGCAGTTG	0.438	6	56
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76855965	76855965	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	ATTCTACTTAACATCTGAAAA	0.363	53	12
DROSHA	29102	broad.mit.edu;ucsc.edu	37	5	31526303	31526303	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	CCGATCCAGGGACCGATGCCT	0.592	33	42
REV3L	5980	broad.mit.edu;hgsc.bcm.edu	37	6	111694047	111694050	+	Frame_Shift_Del	DEL	TAAA	TAAA	-			TCGA-FG-A4MX-01A-11D-A26M-08	TCGA-FG-A4MX-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4f2ebb-fe7f-4c5d-8cf2-64d21c54b45e	e34ba5e5-ed6c-4d3c-b63d-1a74fe43f8f4	CATACAGTTCTAAATCTTCACAGG	0.417	40	88