Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OPN4 94233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 88418318 88418318 + Missense_Mutation SNP C C T rs143641898 byFrequency TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGCCCTGGACCGCTACCTGGT 0.617 20 22 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89624256 89624256 + Missense_Mutation SNP C C G TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AGATCGTTAGCAGAAACAAAA 0.478 27 25 SYT9 143425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 7324401 7324401 + Missense_Mutation SNP G G C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGGTAGCAAAGACAACAACCA 0.562 34 89 OR4A16 81327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55110940 55110940 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GTGATAAAATCGCTATTTCCT 0.438 48 81 SLC22A25 387601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 62997040 62997040 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TATACTATGACGTTGAACATT 0.458 13 33 ADAMTS15 170689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 130343421 130343421 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CCGTGCTCCGCGAGCTGCGGC 0.726 18 39 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112647838 112647838 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGGTGGCCACGGCAGCAATCC 0.537 8 21 SLC8A3 6547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 70515655 70515655 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GTGGGGGGCACACAGGCAAAC 0.592 10 29 SAMD15 161394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 77844618 77844618 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GAGACTCAACCAGAGGTTCCA 0.512 25 47 GOLGA5 9950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 93276685 93276685 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCGGATGCCACTCTGAAGAGA 0.433 11 19 MYO5C 55930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 52534268 52534268 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CTCCTTGCCAGGAATCCTCGG 0.537 62 48 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 63032969 63032969 + Splice_Site SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CAGCTGCAAGGTAGGAGTGGG 0.493 11 11 NTN3 4917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2522817 2522817 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CCGCCGGCCGCCACTGCCACT 0.701 17 26 ATF7IP2 80063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 10574741 10574741 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CACAGAAAGTCCAGTATCCCC 0.388 22 55 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 62055202 62055202 + Nonsense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ATTAAAACTTGAGACTGATTC 0.428 8 24 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 62055208 62055208 + Nonsense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACTTGAGACTGATTCATCGGA 0.443 9 21 PLCG2 5336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 81925184 81925184 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGATCTCCTCGTCACATAACA 0.552 5 9 PLCG2 5336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 81953229 81953229 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ATGAGACTGCGCTACCCCGTG 0.537 26 44 FOXN1 8456 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 26864332 26864332 + Missense_Mutation SNP G G C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGGGGCACTGGGTGACCTGCA 0.687 19 39 EFCAB3 146779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 60483969 60483969 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCTGCCTTTGCTAATGCTGCC 0.428 22 45 DDX42 11325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 61864442 61864442 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CTGGCACTAAGCGAGGATTTG 0.448 49 101 ARSG 22901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 66391215 66391215 + Splice_Site SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TTTCCGCAGCGTGCTGGACAT 0.597 16 29 TIMP2 7077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76851869 76851869 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGTTGATGTTCTTCTCTGTGA 0.642 32 56 PIEZO2 63895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 10671755 10671755 + Silent SNP T T A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CAAGGACAACTGAAGCATATA 0.323 15 25 AQP4 361 hgsc.bcm.edu;ucsc.edu 37 18 24445621 24445621 + Splice_Site SNP C C A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GAAGGACTTACCCCCACCGCC 0.517 23 105 FHOD3 80206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 34156464 34156464 + Missense_Mutation SNP C C T rs143579901 byFrequency TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AGTAATAAACCGCAATGAAAC 0.373 18 31 CTIF 9811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 46284511 46284511 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGCGCACACCGCAATGCCAAA 0.642 27 24 SEC11C 90701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 56816768 56816768 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TTTTAAACTTCGCCATGATCG 0.493 35 71 SERPINB7 8710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 61449715 61449715 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GAGCCTCTTCGCTGCCCTGGC 0.483 17 35 ZNF236 7776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 74667996 74667996 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AAGGAGGGCCGGGCGCACCAG 0.637 7 12 ABCA7 10347 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1053821 1053821 + Missense_Mutation SNP A A C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGTGCTGCGGACACAGATATG 0.637 20 96 ATP8B3 148229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1785489 1785489 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGGACAGCAGGCAAGACAGGG 0.647 7 33 KANK3 256949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 8389602 8389602 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACACATCAGCGCTGTGGCCCC 0.637 20 57 ATP4A 495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 36046393 36046393 + Silent SNP C C T rs143513836 byFrequency TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGCTGGTGCGCGCAAACACCA 0.667 10 32 ZNF540 163255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 38103617 38103617 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TTTCGAGTTCGTTCTCAAATT 0.398 17 50 SNRPA 6626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41268829 41268829 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGACTCAGGCGCCCCGCATTA 0.657 16 31 ZNF226 7769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 44681060 44681060 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCTTCAAATCCATCAGAAGGC 0.443 31 108 ZBTB40 9923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22852748 22852748 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCACTTTGGAGGAGACCCAGC 0.592 15 76 LCE2A 353139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152671572 152671572 + Silent SNP C C T rs61812675 TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CTGGGGGTGGCGGCTGCTGCC 0.687 52 83 PEAR1 375033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 156884576 156884576 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCCACTTCGACGCCAGGACCG 0.612 13 31 OBSCN 84033 hgsc.bcm.edu;ucsc.edu 37 1 228538635 228538635 + Missense_Mutation SNP C C T rs140996408 by1000genomes TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCCCCGTACCCGCAGATCAGG 0.682 10 42 ISM1 140862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 13280078 13280078 + Missense_Mutation SNP A A G TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GACTACATCAAGCAGTTCCAA 0.567 35 60 RIN2 54453 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 19945627 19945627 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GAATCAGTTTCGCAGATTTAT 0.478 23 72 CABIN1 23523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 24451502 24451502 + Missense_Mutation SNP A A G TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GATCCAGCCAAGCACTGTCAG 0.577 28 75 COLEC11 78989 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 3691388 3691388 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CTACGCGGACGCCCAGCTGTC 0.662 20 60 NLRC4 58484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 32461395 32461395 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGACCAAATTGTGAAGATTCT 0.303 6 12 SLITRK3 22865 hgsc.bcm.edu;broad.mit.edu 37 3 164907844 164907844 + Missense_Mutation SNP T T C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCACAGGTAATGTCTCCCACC 0.488 6 97 WFS1 7466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 6304060 6304060 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AGGCCATCAGCTGCCTCAACT 0.652 18 35 ENPEP 2028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 111398156 111398156 + Missense_Mutation SNP C C A rs112068198 byFrequency TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGCCGGCTGGCTGAACGGCTC 0.502 22 57 HHIP 64399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 145579961 145579961 + Silent SNP G G A rs146735069 TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AAACAACTGCGGATGAGTTTT 0.358 10 38 ACSL1 2180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 185678385 185678385 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ATTGTCGATAGAAAATAATTC 0.453 18 28 C6 729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 41149449 41149449 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACTGGCGGCCGTCTTGGCAGG 0.418 38 70 HAPLN1 1404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 82937339 82937339 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGAAGCAGTAGACACCATACA 0.453 16 113 GRIA1 2890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 153078545 153078545 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TACTCCTACCGTCTGGAGATT 0.542 14 31 HLA-DPB1 3115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 33052887 33052887 + Silent SNP C C A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CCAACCTGATCCGTAATGGAG 0.552 24 71 TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 155450785 155450785 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGCTACGGGAGGAATGAGAGC 0.567 14 28 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 2983911 2983911 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TGTGCGTAGCGCATGGCTAAG 0.567 20 94 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55223567 55223567 + Missense_Mutation SNP G G T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CCGAGCCTGTGGGGCCGACAG 0.607 3346 371 ZNF713 349075 hgsc.bcm.edu;ucsc.edu 37 7 56007266 56007266 + Missense_Mutation SNP A A C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CAGAGGATACATCTCATTCAA 0.433 7 41 CDK14 5218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 90377064 90377064 + Silent SNP T T C TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AAGGATCTTATGCTACAGTAT 0.338 21 69 PTCD1 26024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 99027240 99027240 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ATCCTAAGGTCTGCGCACTTG 0.607 23 67 CTTNBP2 83992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 117424371 117424371 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TAATTAATGTCCAGTCCTTCT 0.478 36 128 TRPV5 56302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142627452 142627452 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACCTCTTTGTCGAACGTCACA 0.512 29 65 ADAM28 10863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 24207446 24207446 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ATGGTAATCCGGCACCAGAGC 0.478 26 53 MAK16 84549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 33356082 33356082 + Silent SNP C C A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCAGAGAAAACGAGCCTATGT 0.483 18 60 ASPN 54829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 95228797 95228797 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACTTCTTTGTGGTTAGAAAGG 0.373 39 61 ENG 2022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 130587089 130587089 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGCAGCTGGAGGCATGAAGTG 0.617 11 9 ASMT 438 hgsc.bcm.edu;ucsc.edu 37 X 1748790 1748790 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGTGCTGACCGCCTTTGACCT 0.557 44 81 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 118284501 118284501 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGAGAGAAGCGTGAAAGGCAG 0.642 50 18 MAGEA11 4110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 148798319 148798319 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CAAGGGCCCACGCTGAGACCA 0.527 74 31 TBL1Y 90665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 Y 6911098 6911098 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACTAGTGCCACCGTCTGCCCT 0.532 15 10 PTCH2 8643 broad.mit.edu;ucsc.edu 37 1 45294292 45294292 + Silent SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCAGACACTCGCCCATGCGCT 0.632 5 9 PMFBP1 83449 broad.mit.edu;ucsc.edu 37 16 72166638 72166638 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GCACCTGCAGGGGCCTCACCA 0.632 12 48 ZNF492 57615 broad.mit.edu;ucsc.edu 37 19 22847685 22847685 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TTTAACCTATCGTCACAACTT 0.383 8 49 RBMS3 27303 broad.mit.edu;ucsc.edu 37 3 29977603 29977603 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CAACCATGGACCATCCCATGT 0.438 5 16 FSIP2 401024 broad.mit.edu;ucsc.edu 37 2 186670853 186670853 + Missense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCTGAAATAGGCTATAAAAAG 0.328 10 27 NFKBIA 4792 broad.mit.edu;ucsc.edu 37 14 35872895 35872895 + Splice_Site SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AAGCGGCGCACCTGCTGCAGG 0.567 4 8 ANKRD20A11P 391267 broad.mit.edu;ucsc.edu 37 21 15352074 15352074 + RNA SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CGCCAGACAGCGCTCCATCTC 0.662 9 20 FLNB 2317 broad.mit.edu;ucsc.edu 37 3 58080624 58080624 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACACCATCAGCGCCGGGCAAG 0.542 41 108 SERPINA3 12 broad.mit.edu;ucsc.edu 37 14 95090030 95090030 + Missense_Mutation SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 ACCCTCCTTTCTGCATTAGTG 0.498 31 54 OR7C2 26658 broad.mit.edu;ucsc.edu 37 19 15052351 15052351 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCCTGGGATTCGCAGAGGACT 0.498 27 82 STOML1 9399 broad.mit.edu;ucsc.edu 37 15 74281475 74281475 + Nonsense_Mutation SNP G G A TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TTGAAGGCTCGTGTCCTCAGA 0.602 3 23 HSD17B2 3294 broad.mit.edu;ucsc.edu 37 16 82104638 82104638 + Silent SNP C C T TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 AATGCATGGCCGTGAACTTCT 0.488 16 41 ZC3H11A 9877 broad.mit.edu;hgsc.bcm.edu 37 1 203818970 203818971 + Frame_Shift_Ins INS - - G TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGGGAGATGTAGCCTCTTGCAA 0.5 16 43 SAP130 79595 broad.mit.edu;hgsc.bcm.edu 37 2 128707774 128707776 + In_Frame_Del DEL CAC CAC - TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TCTCAGCCTTCACCAGAAGACTC 0.468 34 71 AADACL2 344752 broad.mit.edu;hgsc.bcm.edu 37 3 151475059 151475062 + Frame_Shift_Del DEL TATG TATG - TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 TAGAAAAGACTATGTATATACTGA 0.397 16 38 PRUNE2 158471 broad.mit.edu;hgsc.bcm.edu 37 9 79318755 79318758 + Frame_Shift_Del DEL CTAA CTAA - TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 GGGAAGCTTGCTAACTGAGTTCCC 0.417 14 44 PRX 57716 broad.mit.edu;hgsc.bcm.edu 37 19 40900042 40900043 + Frame_Shift_Del DEL TT TT - TCGA-FG-A4MW-01A-11D-A26M-08 TCGA-FG-A4MW-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 599c96ab-fdfb-4322-aea4-4915a5d98975 bf3e7591-0488-4648-b6ce-4630ce883551 CTTGGGTGACTTCTCTCTGACG 0.688 39 130