Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	16992025	16992025	+	Silent	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	CTTCGTGGCCGCCATCCAAAA	0.448	16	40
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56114203	56114203	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	ATTCTAGTGGCCATTCTCAGA	0.383	27	51
PBX4	80714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	19672911	19672911	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	GTGGCCCCCTGCCAGCTACCC	0.597	4	27
FAM89A	375061	hgsc.bcm.edu;broad.mit.edu	37	1	231155648	231155648	+	Silent	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	TGGAGAGGGAGGAGACAGGCA	0.567	3	58
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	43166845	43166845	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	TGGCTGCAGGCGCGCGGCCGG	0.672	69	96
MYO7B	4648	hgsc.bcm.edu;ucsc.edu	37	2	128367552	128367552	+	Silent	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	TGGGCAGGGAGCACGGTGCCC	0.642	4	33
HOXD3	3232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	177034190	177034190	+	Silent	SNP	A	A	G			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	AGCAGCAGccaccacaacccc	0.642	17	44
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	207175936	207175936	+	Silent	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	AGTATATTTCGAAATACTCTG	0.363	10	17
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	ATAAGCATGACGACCTATGAT	0.393	44	121
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279		TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	AATGATGCACATCATGGTGGC	0.378	8	109
CERCAM	51148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131186792	131186792	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	GCATCCCTGCGGGCTGAAGGG	0.617	39	69
KCNQ4	9132	broad.mit.edu;ucsc.edu	37	1	41283890	41283890	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	GGTCTGGTCCGCCGGATGCTG	0.612	23	58
SLC9A7P1	121456	broad.mit.edu;ucsc.edu	37	12	98850610	98850610	+	RNA	SNP	C	C	A			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	AAAGTGCACCCGGCAGTACTT	0.602	5	15
TEKT1	83659	broad.mit.edu;ucsc.edu	37	17	6703471	6703471	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8187-01A-11D-2253-08	TCGA-FG-8187-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	03ef1338-e963-4cc2-a596-27334a685da3	ae886eb1-4d03-4bb3-b9b4-ad379272ab7a	TTCTCTTTGACCTGGATCTCC	0.527	12	135