Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ADARB2 105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 1779285 1779285 + Missense_Mutation SNP G G C TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TCTTGGACTTGCATTTGAGTT 0.701 55 328 SLC17A6 57084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 22360149 22360149 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGGAAAATCACTCGGCCAGAT 0.473 9 31 OR5D14 219436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55563737 55563737 + Missense_Mutation SNP C C T rs145440752 byFrequency TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGTTAGTGGGCGCCACAAAGC 0.463 35 63 MMP20 9313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 102465488 102465488 + Splice_Site SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TCCAGAAAATCCTATGGGACA 0.418 16 24 MDM2 4193 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 69230521 69230521 + Missense_Mutation SNP T T C TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TCCTGAAATTTCCTTAGCTGT 0.308 28 52 GALC 2581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 88454494 88454494 + Missense_Mutation SNP T T A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CTACCTGTTGTCTGCCCATCA 0.358 18 41 LIPC 3990 hgsc.bcm.edu;broad.mit.edu 37 15 58855814 58855814 + Missense_Mutation SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 GCAGTGTGGGCCAATGTCTGG 0.507 7 95 LINS 55180 hgsc.bcm.edu;broad.mit.edu 37 15 101109585 101109585 + Missense_Mutation SNP C C G rs148450316 TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TTTTACTATTCTGTAAAATAT 0.383 6 100 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89351668 89351668 + Missense_Mutation SNP G G C TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGTGCCGAGAGTCTCAGCTTC 0.488 11 147 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578203 7578203 + Missense_Mutation SNP C C A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 GGCACCACCACACTATGTCGA 0.537 28 33 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578265 7578265 + Missense_Mutation SNP A A T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TTCCACTCGGATAAGATGCTG 0.552 38 56 EFCAB5 374786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 28409944 28409944 + Silent SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CCTATCACTACGTCCACAGCC 0.398 34 206 CCL11 6356 hgsc.bcm.edu;broad.mit.edu 37 17 32612839 32612839 + Silent SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGAAGGTCTCCGCAGCACTTC 0.597 14 248 LAMA1 284217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 7023260 7023260 + Silent SNP C C A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TCAGGCACTCCCCGGTGACTG 0.602 34 43 STARD6 147323 hgsc.bcm.edu;broad.mit.edu 37 18 51858176 51858176 + Missense_Mutation SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AGTCTCGAGGGGAAATGGAGC 0.368 4 70 TSHZ1 10194 hgsc.bcm.edu;broad.mit.edu 37 18 72999933 72999933 + Silent SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AGTCCTCCACGCCCTCCACAG 0.602 4 63 CSNK1G2 1455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1979554 1979554 + Missense_Mutation SNP A A G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AAGCCCGACTATGACTACCTG 0.652 42 52 ICAM1 3383 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10394873 10394873 + Missense_Mutation SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CTATGGCAACGACTCCTTCTC 0.632 30 50 AKAP8 10270 hgsc.bcm.edu;broad.mit.edu 37 19 15472624 15472624 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TTTCTGTTTACAATGTATTCC 0.458 3 34 ADCK4 79934 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41197999 41197999 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 GTGGCTGCGTCTGGCTGGCGA 0.672 18 25 ZNF460 10794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 57802257 57802257 + Missense_Mutation SNP G G C TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CACAGAGTGAGAAACTCCATG 0.473 38 65 TCHH 7062 hgsc.bcm.edu;broad.mit.edu 37 1 152084077 152084077 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CTGCTCGCGTCTTAGTTGTTG 0.652 17 290 LAMC1 3915 hgsc.bcm.edu;broad.mit.edu 37 1 183086809 183086809 + Missense_Mutation SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 ACCCTTGATCGCTCAGGGCAA 0.483 5 91 MIA3 375056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 222803484 222803484 + Silent SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGGAAAAAGTCCTAGATAAGG 0.428 21 28 MYH7B 57644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 33567544 33567544 + Silent SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CCATGATGACGCACCTGAACG 0.637 54 90 KCNB1 3745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 48098819 48098819 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AGCAGCGAGTCGTGCGTGTTG 0.662 7 51 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21228306 21228306 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 ACGGTTATCTCAAAAAAGGGA 0.423 77 91 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TAAGCATGACGACCTATGATG 0.398 32 50 VHL 7428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 10191622 10191622 + Silent SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CACAGGAGCGCATTGCACATC 0.468 16 19 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 131929091 131929091 + Missense_Mutation SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TATAGCAAGTCGAAGAGCTTC 0.343 17 23 RBAK 57786 hgsc.bcm.edu;ucsc.edu 37 7 5104674 5104674 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TCGATGGGCACCAGCCACTTC 0.383 22 61 HEPACAM2 253012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 92838050 92838050 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TATTGTCAGTCCTCCTAATCC 0.443 32 24 KIAA1429 25962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 95530133 95530133 + Missense_Mutation SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AGTATGCATGCGTAATTATAA 0.318 12 16 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 113139603 113139603 + Silent SNP G G C TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AAGCATTTGGGCGTTGGCAGA 0.502 35 79 CACNA1B 774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140946550 140946550 + Silent SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CTAGAGGATCCAAAGGGAAAG 0.582 9 17 AMPD1 270 broad.mit.edu;ucsc.edu 37 1 115216305 115216305 + Silent SNP G G A TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TTGCCACTTCGCACATATCAC 0.438 40 42 FRMD7 90167 broad.mit.edu;ucsc.edu 37 X 131214292 131214292 + Missense_Mutation SNP C C G TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TTGGGTTCGTCCACTATCATA 0.373 3 13 MMP24 10893 broad.mit.edu;ucsc.edu 37 20 33862232 33862232 + Silent SNP C C T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CCCAGGACGACGTGGACATCA 0.657 90 135 GABRG2 2566 broad.mit.edu;ucsc.edu 37 5 161569181 161569181 + Missense_Mutation SNP G G T TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 AGATTATGTGGTCATGTCTGT 0.403 36 92 TFPT 29844 broad.mit.edu;hgsc.bcm.edu 37 19 54611378 54611379 + Frame_Shift_Ins INS - - CCATC TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 CTGCTCGGCGTCCATCCCGTGG 0.713 30 152 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939914 76939915 + Frame_Shift_Del DEL AG AG - TCGA-FG-8185-01A-11D-2253-08 TCGA-FG-8185-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae4ac656-6510-4297-9f72-ebccd48cf244 d9f613fd-47f3-4f89-a073-b75fad63df72 TGTTACATGCAGTGACCAAGTC 0.371 70 21