Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count UHRF1BP1L 23074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 100502164 100502164 + Splice_Site SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 AAAGTCTCACCCTAATGGACG 0.338 29 76 PTPN11 5781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 112888139 112888139 + Missense_Mutation SNP C C G TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GGAGCTGTCACCCACATCAAG 0.433 60 103 CCDC113 29070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 58296338 58296338 + Missense_Mutation SNP A A G TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CAGCAGTTGAAGATAGAGAAC 0.428 62 87 NUP88 4927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 5312118 5312118 + Silent SNP T T A TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 ACAGTGGGTATGCCACTACTT 0.448 32 97 TEX14 56155 hgsc.bcm.edu;broad.mit.edu 37 17 56690826 56690826 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GTGATGCGCTCGTACACAAGG 0.502 9 166 QTRT1 81890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10823935 10823935 + Missense_Mutation SNP A A T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 TGTGGGAATCACACTGGGCTG 0.577 42 74 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791728 42791728 + Missense_Mutation SNP A A G TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CGGCCCATGAATGCCTTCATG 0.627 15 95 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42791796 42791796 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CCAGGACAACCGGACCGTCAG 0.622 14 87 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42798848 42798848 + Missense_Mutation SNP G G C TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CCGGGCCCTGGTCATGCAGCT 0.602 7 75 ZBTB45 84878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 59028924 59028924 + Missense_Mutation SNP A A C TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 AAGCTTCACGAATGCGCACAG 0.602 8 46 CRYBB2 1415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 25625545 25625545 + Splice_Site SNP C C T rs4049504 TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CAGAGTGGCACGTAAGTGCGT 0.572 10 48 TNFAIP6 7130 hgsc.bcm.edu;broad.mit.edu 37 2 152226605 152226605 + Missense_Mutation SNP G G A TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 AAATGAGTACGAAGATAACCA 0.388 11 147 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 ATAAGCATGACGACCTATGAT 0.393 42 110 EPHA4 2043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 222321395 222321395 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 TGTCCTGGCTCGCACGTGGAA 0.512 15 116 ALDH1L1 10840 hgsc.bcm.edu;broad.mit.edu 37 3 125831636 125831636 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 ACTCTCCGCACGAACTCATCA 0.577 11 158 HTRA3 94031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 8293208 8293208 + Missense_Mutation SNP G G A TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 AACGGGCATCGTCAGCACTGC 0.632 30 52 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 79421075 79421075 + Splice_Site SNP G G A TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GTTCAGTCCCGGTAATTGAAT 0.443 20 214 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 13766101 13766101 + Missense_Mutation SNP A A G TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GTTCTGTAAAAAGTTCCCTGC 0.413 86 122 PCDHB5 26167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140516689 140516689 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GACAACTCGCCCTTCGTGCTG 0.716 14 51 MAS1L 116511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 29454624 29454624 + Silent SNP G G A rs148359929 byFrequency TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 CCATTGGGTCGATGCCAGCTG 0.517 104 145 RHAG 6005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 49583402 49583402 + Missense_Mutation SNP G G T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 TCTCAGTCCAGATCGATACAA 0.453 54 92 PARP12 64761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 139734111 139734111 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GTGCCATAGACCAGGTTTTTC 0.418 16 32 MCPH1 79648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 6479212 6479212 + Splice_Site SNP G G A TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 ATGGGTCTTAGGTAAGAATCC 0.597 14 158 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 73480147 73480147 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 GCCCAGGACGCGCCTGGGGAA 0.542 17 134 VCAN 1462 broad.mit.edu;ucsc.edu 37 5 82849281 82849281 + Missense_Mutation SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 ACGGGAATGCCGTCTGCAGGG 0.473 72 180 TMC6 11322 broad.mit.edu;ucsc.edu 37 17 76109646 76109646 + Silent SNP C C T TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 TCTCCTCCCTCTCCTTCCTCT 0.567 22 120 C5orf20 0 broad.mit.edu;ucsc.edu 37 5 134782790 134782790 + Silent SNP G G A rs113239442 TCGA-FG-7641-01B-11D-2253-08 TCGA-FG-7641-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx 739e3612-208f-4004-a714-d0839f9b5e24 4e9b5d71-7edb-4c2f-b79f-eed7aff5a455 TTGCTGCTCCGTAATGCATAG 0.527 5 50