Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89624305 89624305 + Splice_Site SNP T T G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGACTTGACCTGTATCCATTT 0.463 44 30 MYOF 26509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 95070355 95070355 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGCCTCTCGTCGGCCTCCTTC 0.493 49 20 DUSP5 1847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 112262482 112262482 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TTTGTAGGGGGATATGAGACT 0.408 43 22 DEAF1 10522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 686996 686996 + Splice_Site SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GTCCCCGGCCGCCTGCAAGGA 0.607 10 52 USH1C 10083 hgsc.bcm.edu;ucsc.edu 37 11 17531254 17531254 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GAGTCTTGGGGGGATAGTAGA 0.632 20 27 KCNA4 3739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 30033223 30033223 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGATCCCTGTCGTCCCTAAAC 0.517 42 53 OR4X2 119764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48266712 48266712 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGAGGGTTTGCTTTGTGATAT 0.448 61 92 OR4X1 390113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 48286042 48286042 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCAGTTTCTTCGTGCTGATGG 0.562 30 39 WNT11 7481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 75898143 75898143 + Missense_Mutation SNP C C A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGTACGCTCACACCTGCGGCA 0.642 33 39 A2M 2 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 9246146 9246146 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGCACCAGGCGTGCATGGCCT 0.443 24 25 GJA3 2700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 20716908 20716908 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGCTTCAGCTCGAAGCCGTAC 0.597 23 50 DHRS2 10202 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 24109024 24109024 + Missense_Mutation SNP G G A rs146408773 TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTGTGGGGGCGTCGACTTCCT 0.642 36 46 FSCB 84075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 44975176 44975176 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGAGACTCTTCAGCTGATGGA 0.517 41 85 PRPF39 55015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 45583422 45583422 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AAACACTCCTGAAAGAACAGG 0.318 22 40 LTBP2 4053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 74969480 74969480 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CGGTGTCCTCGGGGCCCAGGT 0.632 59 97 KCNK10 54207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 88652407 88652407 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCAGCTTATCGTGGATCTCCA 0.662 22 21 VRK1 7443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 97326941 97326941 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGACTACACTGAAAAACCTCT 0.323 14 24 SIVA1 10572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105222095 105222095 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GAGGGCTGCACGTGGGCAGAT 0.667 17 25 NDN 4692 hgsc.bcm.edu;broad.mit.edu 37 15 23932258 23932258 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGCCAGGGTCGCGGACGGAGG 0.701 11 15 E4F1 1877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2282496 2282496 + Missense_Mutation SNP C C T rs144383218 TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCACAGCAGCCGCAAGGACCA 0.697 16 20 ITGAD 3681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31405625 31405625 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGATGCAGGCGGCTTTGGGCA 0.582 18 48 JPH3 57338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 87678021 87678021 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGCATCCCGACGCCTCTCCGG 0.697 41 55 CLUH 23277 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 2600045 2600045 + Missense_Mutation SNP A A G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGTCTCTGCCAGCTCCTTCAC 0.672 19 28 FAM64A 54478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 6348675 6348675 + Missense_Mutation SNP T T C TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CAGCAGGGCCTCCAGGCTGCA 0.577 47 46 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10297737 10297737 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCTCCTGGCCCCGGAGAGCAT 0.532 30 42 RNF112 7732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 19316707 19316707 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTTCTTGCTGGGGAAAGAAGG 0.627 21 30 NAGLU 4669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40695945 40695945 + Missense_Mutation SNP A A G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTACGAGCAGAACAGCCGCTA 0.627 9 10 BZRAP1 9256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56402928 56402928 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCTGCAGCTCCCTGCACTCCC 0.657 26 28 KCNJ2 3759 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 68171691 68171691 + Missense_Mutation SNP A A G rs150326473 TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGGCTGCATCATCGATGCTTT 0.483 75 112 CANT1 124583 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 76991223 76991223 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACCACATCACCCGTAGTGGTC 0.627 18 31 NPLOC4 55666 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 79526328 79526328 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCCTGTGCCTGGCTGGTTCAT 0.672 12 15 COLEC12 81035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 346546 346546 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCTGGTCAGCGTCCGCAGGTG 0.473 35 46 WDR7 23335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 54424326 54424326 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCACCGTATCGTTTGGCCTCT 0.493 86 149 OR1M1 125963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9204448 9204448 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGGTGCCTCACTACTTCTGCG 0.572 68 191 ZNF441 126068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11890886 11890886 + Nonsense_Mutation SNP G G T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCAATGTGGAGGACCCTTTAC 0.383 21 84 ZNF431 170959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 21366713 21366713 + Missense_Mutation SNP G G C TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ATTCATACTAGACAGAAACCC 0.323 34 95 ZNF536 9745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 31040141 31040141 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCAGCGATGGCGGGGACAGCC 0.597 34 82 IL4I1 259307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50393077 50393077 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ATGCGTGCCCCTCGGGGCTGG 0.687 21 56 SHANK1 50944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 51175329 51175329 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AAAGAAGGACGCTCGTAACTT 0.577 19 42 ZNF331 55422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54074900 54074900 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTTTTCTCAGGAGGAGTGGGC 0.517 183 509 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 79392754 79392754 + Silent SNP T T A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCTTATAATATACAAATGCAA 0.274 26 48 VCAM1 7412 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 101198155 101198155 + Silent SNP A A G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TAATTTCTACAAAAATGGAAG 0.458 37 52 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152328212 152328212 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTAGACTCATGTTGTCCAAAA 0.473 209 346 RNASEL 6041 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 182544690 182544690 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ATACAGGGAAGGGTCTCCAAT 0.398 29 45 GREM2 64388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 240656344 240656344 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCTTGAGTCGGAAGGGTGGGT 0.647 46 73 SDC1 6382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 20403920 20403920 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTCTCCAGCCGGCAGGGTGGA 0.687 45 99 LRRTM4 80059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 77746149 77746149 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AATCCAAATTCAATTTTTGTA 0.398 15 13 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179498031 179498031 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CGTACAGAGGCTTTTCCACTT 0.403 74 114 DNAH7 56171 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 196720560 196720560 + Missense_Mutation SNP T T A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGCCTTCTTTTGTTTATTTAA 0.403 143 241 CRYGB 1419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209007511 209007511 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCCTCCAGCACATTGAGGGAG 0.542 75 116 DGKD 8527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 234360660 234360660 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGTCATCAGTCGCCTGTTAAT 0.493 46 78 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238303658 238303658 + Missense_Mutation SNP T T C TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACGATACGTATTTAACAGGAA 0.368 37 56 GPR27 2850 hgsc.bcm.edu;broad.mit.edu 37 3 71803791 71803791 + Silent SNP G G T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGGGCGCCACGCACCTCGTCT 0.746 4 5 VEPH1 79674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 156978935 156978935 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACAGATATGTGGTTACTTCTC 0.408 48 83 MECOM 2122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 168838969 168838969 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCGAATGTGCCGCTGAAGGTT 0.517 25 41 LETM1 3954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 1824793 1824793 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCGTGGCCTCCAGCTTGGCCT 0.632 44 63 SMAD1 4086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 146435947 146435947 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCAGGGCAACCGAGTAACTGT 0.532 27 40 IRX1 79192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 3599597 3599597 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CACCTGGTTCGCCAACGCGCG 0.622 44 76 ARHGEF28 64283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 73048961 73048961 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGAGGAGCTCGTGCTGGCTCT 0.567 13 23 RASGRF2 5924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 80382758 80382758 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACCAGCCAAACGTTCATCCGC 0.532 37 70 BTN2A1 11120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 26463544 26463544 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGCATATCTAGAGGGTGGTAC 0.587 49 78 DPY19L1 23333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 34978935 34978935 + Silent SNP T T A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TGGGCCGAAGTGCAGAGAGCT 0.502 38 103 UBE2D4 51619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 43990260 43990260 + Missense_Mutation SNP A A G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGTGCCAGAGATAGCACACAC 0.572 23 85 EGFR 1956 hgsc.bcm.edu;broad.mit.edu 37 7 55221822 55221822 + Missense_Mutation SNP C C T rs149840192 TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGCTTTGGTGCCACCTGCGTG 0.592 2307 118 DOCK4 9732 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 111634282 111634282 + Missense_Mutation SNP A A G TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACCATTTCAAATTGTCTGTGA 0.308 35 86 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142655048 142655048 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCAGAGATGCGCCAGCCTCCA 0.517 18 44 GIMAP4 55303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150269789 150269789 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCTGATCCAGCGCGTGGTGAG 0.542 55 118 BLK 640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 11414294 11414294 + Silent SNP C C T rs139994406 by1000genomes TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TCCGACTCTACGCAGTGGTCA 0.617 31 45 RP1 6101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 55538303 55538303 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 TAATAACTCTGGAACTGACAA 0.373 24 34 PSKH2 85481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 87081703 87081703 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGCTCGGAAGCGAGCCACCTG 0.672 13 23 COL14A1 7373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 121238908 121238908 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GATGAGGTGACGACAGACAGT 0.483 24 41 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 139895346 139895346 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GCCTGGCAGCCGCCGCCCCCA 0.672 5 7 SYK 6850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 93606246 93606246 + Silent SNP G G A rs139401525 by1000genomes TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ACATCACCCGGGAGGAGGCAG 0.632 10 18 CHRDL1 91851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 110002887 110002887 + Splice_Site SNP A A T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AAATTGCTTTACCTGGGCAGC 0.473 89 21 ACTRT1 139741 hgsc.bcm.edu;ucsc.edu 37 X 127185247 127185247 + Missense_Mutation SNP C C A rs61741364 byFrequency TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCTTCATGAGCCTTTCCTCCA 0.502 59 16 SERPINB7 8710 broad.mit.edu;ucsc.edu 37 18 61449685 61449685 + Missense_Mutation SNP A A T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGGAAATGGAAATGTGTTCTT 0.507 34 78 EP400 57634 broad.mit.edu;ucsc.edu 37 12 132466657 132466657 + Silent SNP G G T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CCCCCACGCCGCAGGCCGCGC 0.592 100 189 LRFN5 145581 broad.mit.edu;ucsc.edu 37 14 42356700 42356700 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTCATTACTCGTCATACACAT 0.488 48 67 NOTCH4 4855 broad.mit.edu;ucsc.edu 37 6 32188296 32188296 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CAGCTTGTGCCGCCCCAGCCA 0.617 45 93 ACER1 125981 broad.mit.edu;ucsc.edu 37 19 6312225 6312225 + Silent SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CACTGCCCAGGAGCCACAGGA 0.627 41 104 GMDS 2762 broad.mit.edu;ucsc.edu 37 6 1961060 1961060 + Silent SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GTATTTCCTGCACTTTCCCAT 0.498 70 108 IL31RA 133396 broad.mit.edu;ucsc.edu 37 5 55178899 55178899 + Missense_Mutation SNP G G A rs142659639 TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AAGATTTTCCGTGTGAAACCA 0.353 36 70 RPL12P38 645688 broad.mit.edu;ucsc.edu 37 17 58511145 58511145 + RNA SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 ATGAGGGTGGCGGCCATCAAC 0.463 14 26 RNF213 57674 broad.mit.edu;ucsc.edu 37 17 78354716 78354716 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGGGCTGCCCCCAGTGGTCTT 0.597 146 255 DDX56 54606 broad.mit.edu;ucsc.edu 37 7 44608558 44608558 + Missense_Mutation SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 CTTGCCTCCCGAATGGCCTGC 0.537 73 207 MPO 4353 broad.mit.edu;ucsc.edu 37 17 56355470 56355470 + Missense_Mutation SNP C C T TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGGATGCAGTCGGCTTGGTTC 0.622 36 69 RP11-707M1.1 0 broad.mit.edu;ucsc.edu 37 11 49598093 49598093 + RNA SNP G G A TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 AGGGATTCCTGCTGGCATTCG 0.522 8 18 KAT6B 23522 broad.mit.edu;hgsc.bcm.edu 37 10 76784946 76784949 + Frame_Shift_Del DEL ACAA ACAA - TCGA-FG-6692-01A-11D-1893-08 TCGA-FG-6692-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx a1f89c84-3301-45a0-b0ad-ab80779f23d4 7da7cbb5-e882-4c6b-9da5-326ba7e9ca69 GGAAGAAAAGACAAACAGAGGAAG 0.451 16 10