Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count AKR1C3 8644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 5144389 5144389 + Nonsense_Mutation SNP C C T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GGGATCTCAACGAGACAAACG 0.383 18 61 KIAA1217 56243 hgsc.bcm.edu;broad.mit.edu 37 10 24825812 24825812 + Missense_Mutation SNP A A T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GTGCCACCCAAGGAGAAGAAG 0.507 6 65 LRP1 4035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57588464 57588464 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TGAACATGGCGAGGACGAGAC 0.597 13 48 KLC1 3831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 104143843 104143843 + Missense_Mutation SNP A A G TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 AGAAGCTGCTATGAGGTCTCG 0.398 23 48 MYO5A 4644 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 52720613 52720613 + Missense_Mutation SNP G G C TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GTATAAATAAGTTTGGAATCA 0.408 42 92 CLCN7 1186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 1510460 1510460 + Missense_Mutation SNP C C T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 AGCACGAAGGCGGCGTTCAGC 0.597 32 64 CDH15 1013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 89261356 89261356 + Silent SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GCTCGGTGGCGGGGACGCTGA 0.632 9 16 CCR10 2826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40832563 40832563 + Missense_Mutation SNP T T C TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 ACATCGGCCTTGTAGCAAAGC 0.637 8 29 FAM5B 57795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 177247827 177247827 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TGGCTTGAAAGTGCTGTTCAA 0.607 48 103 SIPA1L2 57568 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 232607260 232607260 + Silent SNP C C T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTCCTATGTGCCTTTTCCTCA 0.383 26 75 NCAPH2 29781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50956005 50956005 + Splice_Site SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTCTCTCTCAGGCGGGCCAAG 0.632 30 72 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 73836722 73836722 + Missense_Mutation SNP A A G TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TCTGGGGAGAAAAGTTCCCTG 0.433 14 81 MARCO 8685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 119739756 119739756 + Missense_Mutation SNP C C T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 CAGGGTGTTCCGGGCCCTCCT 0.642 16 27 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 ATAAGCATGACGACCTATGAT 0.393 17 72 BBS7 55212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 122782768 122782768 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTCTCCTGAGGTGTGTTGATA 0.418 25 11 CAST 831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 96077000 96077000 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TGCTATAGACGCCTTGTCATC 0.433 22 33 FUCA2 2519 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 143823182 143823182 + Missense_Mutation SNP T T C TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 CCTCAAAAACTACAGAAATGG 0.408 24 32 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107808830 107808830 + Missense_Mutation SNP T T C TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTGCTGATCCTGGGATTTACT 0.353 6 32 RAB2A 5862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 61484623 61484623 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTCGGTGCTCGAATGATAACT 0.323 11 36 SPANXD 64648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 140785767 140785767 + Missense_Mutation SNP A A G TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 AACCACTAGTATGGTCGAGGA 0.498 78 53 OR1A1 8383 broad.mit.edu;ucsc.edu 37 17 3119138 3119138 + Missense_Mutation SNP C C T TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TTCTTCTCATCGGTAACCATC 0.483 50 134 VNN3 55350 broad.mit.edu;ucsc.edu 37 6 133045776 133045776 + Missense_Mutation SNP A A G TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TACTGTGTGCAGTCCATCAAA 0.388 6 13 HIST1H3C 8352 broad.mit.edu;ucsc.edu 37 6 26045799 26045799 + Missense_Mutation SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GAAATCCGTCGCTACCAGAAG 0.622 5 35 OBSCN 84033 broad.mit.edu;ucsc.edu 37 1 228529314 228529314 + Splice_Site SNP G G A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TGCCTGTGTGGCGTGAGTGTC 0.672 5 20 HCLS1 3059 broad.mit.edu;ucsc.edu 37 3 121351926 121351926 + Missense_Mutation SNP C C A TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 CCGGGAGAGTCTGCCTAATGG 0.587 6 21 CLK1 1195 broad.mit.edu;hgsc.bcm.edu 37 2 201726490 201726493 + Frame_Shift_Del DEL CTTC CTTC - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TATGTGATCTCTTCCTTCTTTTAT 0.397 45 165 RBPJ 3516 broad.mit.edu;hgsc.bcm.edu 37 4 26426086 26426088 + In_Frame_Del DEL TTT TTT - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GTGGGGAGCCTTTTTTATTCATC 0.36 28 78 ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu 37 8 77776374 77776377 + Frame_Shift_Del DEL CAAT CAAT - rs76951673 TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 AAAGAGAAAACAATCAAACAAGCA 0.456 22 44 RBM12B 389677 broad.mit.edu;hgsc.bcm.edu 37 8 94745644 94745648 + Frame_Shift_Del DEL TTAAC TTAAC - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TACAGCAAAGTTAACTTAACTTTTC 0.332 19 47 C12orf65 0 broad.mit.edu;hgsc.bcm.edu 37 12 123738357 123738359 + In_Frame_Del DEL AAG AAG - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 GATGGCAGGCAAGAAGGACTACC 0.557 10 51 UBL3 5412 broad.mit.edu;hgsc.bcm.edu 37 13 30341404 30341406 + In_Frame_Del DEL ACA ACA - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 ACAGGATTACACAACAATTACTC 0.433 12 38 TINF2 26277 broad.mit.edu;hgsc.bcm.edu 37 14 24709491 24709493 + In_Frame_Del DEL TAA TAA - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 CCCTAGGAGGTAATAATGATAGT 0.498 19 80 PAF1 54623 broad.mit.edu;hgsc.bcm.edu 37 19 39879756 39879758 + In_Frame_Del DEL TCT TCT - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 TCCTCAAAAGTCTTCTCAATGGC 0.483 30 104 CIC 23152 broad.mit.edu;hgsc.bcm.edu 37 19 42797980 42797981 + Frame_Shift_Del DEL TG TG - TCGA-FG-5964-01A-11D-1705-08 TCGA-FG-5964-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c6888be2-4517-41e4-a801-9c915f24e737 96d57c40-fcc5-4dc4-857c-b2d334627206 CCTTTGACTCTGTGGACAAGTG 0.693 32 35