Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PDZD7 79955 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 102789858 102789858 + Missense_Mutation SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CAGGTATCGCGTTGCGGTGGA 0.657 35 34 DPY19L2 283417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 63994085 63994085 + Splice_Site SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 AAAGTACTTACGTGGTCTGAA 0.308 29 43 PRMT5 10419 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23390166 23390166 + Missense_Mutation SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GCAGAACAGACTGGTGCTGTC 0.542 17 31 FAM64A 54478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 6348641 6348641 + Missense_Mutation SNP C C T rs11538170 TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CTCCTGGAAACGCCTGGAAAC 0.627 20 48 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18052562 18052562 + Missense_Mutation SNP A A G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TCGGATGAGGACATGTCCACT 0.527 12 18 SLFN12 55106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 33738552 33738552 + Silent SNP C C T rs150878441 TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 AAATTACTTGCGACCTTAAAT 0.393 26 47 KLHL26 55295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 18779269 18779269 + Silent SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GCAGCCACACGTGCGTGGCCG 0.677 9 23 ANKRD27 84079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 33096834 33096834 + Silent SNP A A G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TGGGTTTTGCATTCGAATCTA 0.473 16 16 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42798878 42798878 + Missense_Mutation SNP T T G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CCATGGCTTCTTCCCGTCAGG 0.597 35 12 ZNF347 84671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 53643617 53643617 + Missense_Mutation SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 ACTTTCCACACGTTACATTTG 0.413 56 31 FUBP1 8880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 78425869 78425869 + Splice_Site SNP C C G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CATCTTCTACCTGGATCAGGA 0.413 14 18 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21234703 21234703 + Silent SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TCATAGATGCCCCAGAGAGGC 0.493 30 66 OTOF 9381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26696893 26696893 + Missense_Mutation SNP C C G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GGGCCGGATGCCCATGGGCAC 0.647 20 44 ARHGEF4 50649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131802995 131802995 + Missense_Mutation SNP C C A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TGCCAGCAAGCAGCAGGTCAC 0.617 20 41 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 ATAAGCATGACGACCTATGAT 0.393 27 49 CPS1 1373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 211471549 211471549 + Silent SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GCCACTTGGGCATTGTGGGTG 0.478 37 34 CCDC108 255101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219900291 219900291 + Silent SNP C C T TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CTTTCCAATGCAGCTCCTCAG 0.502 62 79 ADAMTS9 56999 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 64607885 64607885 + Missense_Mutation SNP T T C TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TTGGCAGGGTTTACTGCATGC 0.363 32 26 HK3 3101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 176310845 176310845 + Missense_Mutation SNP A A G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GTCATTGACAATGGCAACCAC 0.582 11 102 ATXN1 6310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 16327718 16327718 + Missense_Mutation SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TGGGATCATCGTCTGGTGGGG 0.652 11 18 THEMIS 387357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 128134187 128134187 + Silent SNP T T C TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CAGTGATCTCTTCTACCAGAG 0.468 45 65 STOM 2040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 124111437 124111437 + Missense_Mutation SNP C C A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 CAGAGAGGATCTGAGAAAGAT 0.478 19 10 PRRC2B 84726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 134349974 134349974 + Missense_Mutation SNP A A G TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 TGACAGCTGTATCTCTTCTCA 0.522 5 29 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 53618082 53618082 + Splice_Site SNP G G C TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 ATGTCCATGAGCTACATAAAG 0.433 14 19 ACRC 93953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70824013 70824013 + Missense_Mutation SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GGAAGCTTCCGACGACAGCAG 0.527 117 154 JMJD1C 221037 broad.mit.edu;ucsc.edu 37 10 64975203 64975203 + Missense_Mutation SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GCTTGGGCACGTGTATAATGG 0.378 60 78 PCSK2 5126 broad.mit.edu;ucsc.edu 37 20 17240949 17240949 + Missense_Mutation SNP G G A TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 AAGAGAAGACGCAGCCTACAC 0.532 42 54 FUS 2521 broad.mit.edu;hgsc.bcm.edu 37 16 31200459 31200461 + In_Frame_Del DEL ACA ACA - TCGA-EZ-7264-01A-11D-2024-08 TCGA-EZ-7264-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 00493087-9d9d-40ca-86d5-936f1b951c93 d5dfac45-4aff-481d-9117-807ed47b7b10 GATAATTCAGACAACAACACCAT 0.374 46 184