Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ITIH2 3698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 7786812 7786812 + Missense_Mutation SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 TAAAGAGATGTCCTTTTCTGT 0.418 23 50 VCL 7414 hgsc.bcm.edu;broad.mit.edu 37 10 75834513 75834513 + Missense_Mutation SNP T T G TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATGAAGATTTTTGTAACAACT 0.269 9 157 CTSC 1075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 88042410 88042410 + Missense_Mutation SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATGTATGTAGTTGCAGTCCAA 0.388 35 50 CACNA2D4 93589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 1992145 1992145 + Missense_Mutation SNP G G A TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GTCCGCCAGCGTTGAGATCTG 0.642 13 23 LPAR5 57121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 6729924 6729924 + Missense_Mutation SNP C C T TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GTAGCGGCAACGCGAGGGCCT 0.726 5 11 BICD1 636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 32480873 32480873 + Missense_Mutation SNP A A G rs116296656 by1000genomes TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 AGCATAGCCAACGAAAATCAC 0.458 29 64 COG3 83548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 46092961 46092961 + Silent SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATAGCAACAATGCCTTGATAG 0.393 28 96 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577129 7577129 + Missense_Mutation SNP A A G TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ACGCACCTCAAAGCTGTTCCG 0.537 19 6 FPGT-TNNI3K 100526835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 74801804 74801804 + Missense_Mutation SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATTGCAAAACTCTTGATGGAA 0.353 22 50 AKNAD1 254268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 109380254 109380254 + Missense_Mutation SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 AGCTGAAGTATATTTGCTTTC 0.403 12 104 DCST2 127579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 155005617 155005617 + Missense_Mutation SNP A A C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GGTCTGGTTCAGGGCCAGCTC 0.632 9 16 OR10J3 441911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 159284385 159284385 + Missense_Mutation SNP C C T TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 TTTGTGCTGCCGCCTGAAGCT 0.453 110 179 LBP 3929 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 36983811 36983811 + Splice_Site SNP T T A TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GAGAGCAGGGTAAGAAGGTCC 0.572 8 39 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATAAGCATGACGACCTATGAT 0.393 36 48 SLC4A7 9497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 27444777 27444777 + Missense_Mutation SNP A A G TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 AATATAACACACAAGGCTGCT 0.378 67 84 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52416412 52416412 + Missense_Mutation SNP G G A TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 TGTGAAGAAGGTCCTGCTCAA 0.582 92 129 KBTBD8 84541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 67054104 67054104 + Missense_Mutation SNP A A G TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 ATTTTTGCTAAATGCATACGT 0.388 23 54 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 7520914 7520914 + Missense_Mutation SNP G G A TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 CATGCGAGACGCCATCATTGC 0.547 53 60 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 73849587 73849587 + Missense_Mutation SNP C C T TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 AGGGATGGCACGCTGGAGTAT 0.562 34 51 ALDH1B1 219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 38396046 38396046 + Missense_Mutation SNP C C T TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 TGCCTCTGAGCGGGGCCGGCT 0.647 53 97 MROH2B 133558 broad.mit.edu;ucsc.edu 37 5 41012689 41012689 + Missense_Mutation SNP T T C TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GTTCACCTGATCTTCCAGAGC 0.488 31 47 MYOCD 93649 broad.mit.edu;ucsc.edu 37 17 12666629 12666629 + Missense_Mutation SNP G G A TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 TCTAAAAATTGGGAGCGAAGA 0.483 12 112 HNRNPC 3183 broad.mit.edu;hgsc.bcm.edu 37 14 21679388 21679414 + In_Frame_Del DEL GTCATCCTCGCCATTGGCGCTGTCTCT GTCATCCTCGCCATTGGCGCTGTCTCT - TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GTGCTTAAGAGTCATCCTCGCCATTGGCGCTGTCTCTGTCATCCTCT 0.445 63 254 CDC34 997 broad.mit.edu;hgsc.bcm.edu 37 19 537058 537060 + In_Frame_Del DEL CTT CTT - TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 AGCCCAACACCTTCTCGCCCGCA 0.635 42 72 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76778848 76778849 + Frame_Shift_Ins INS - - GTATC TCGA-E1-5305-01A-01D-1893-08 TCGA-E1-5305-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4c7e66ac-e905-436d-8aee-4da7b8e1df1d a676be18-91f6-45cd-82d5-a604293c8583 GTGTTCTTTATGTATCTGAAGG 0.386 48 53