Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count OR8I2 120586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55860898 55860898 + Missense_Mutation SNP G G C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TCTATTCACTGTTTTGGGAAA 0.378 159 330 KIAA1377 57562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 101818852 101818852 + Missense_Mutation SNP G G A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CCCTTTTCCCGTAGACCAACA 0.348 46 77 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 46242662 46242662 + Nonsense_Mutation SNP C C T TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TTCTGTTTCTCGAGCAGAAAT 0.343 46 96 MED13L 23389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 116460278 116460278 + Missense_Mutation SNP G G A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TGGTGCAGGTGAAGACTGAGC 0.473 15 38 OR11H4 390442 hgsc.bcm.edu;broad.mit.edu 37 14 20710969 20710969 + Missense_Mutation SNP G G C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CTTCTTTGTAGACTTAAGACC 0.418 5 103 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577099 7577099 + Missense_Mutation SNP C C T rs121912660 TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GCGCCGGTCTCTCCCAGGACA 0.542 64 20 SRCIN1 80725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 36714502 36714502 + Missense_Mutation SNP C C T TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GTTGAGATAGCGCAGCCGTTC 0.701 42 55 EMILIN2 84034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 2913269 2913269 + Missense_Mutation SNP T T C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GCATTCCACCTCATCGTGCAC 0.592 32 62 FZR1 51343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 3532532 3532532 + Missense_Mutation SNP G G C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CTCGGGGGGCGGCACAGCTGA 0.652 7 56 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu 37 1 186948459 186948459 + Missense_Mutation SNP A A G TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GTTCCAAGGGAAACTGAGGAA 0.333 8 150 CHD6 84181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 40045243 40045243 + Silent SNP C C T TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GGATCTGGGCCGCCAATGCTG 0.552 86 190 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179456089 179456089 + Silent SNP G G A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b AGTGCTCATCGGTTTTAATCT 0.433 284 593 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b ATAAGCATGACGACCTATGAT 0.393 46 108 SLC23A3 151295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 220034279 220034279 + Missense_Mutation SNP C C T TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GGTAGACATACCACATGAAAA 0.582 101 269 SENP7 57337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 101177814 101177814 + Missense_Mutation SNP T T G TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TGGTGATGACTTGGAAGTAAC 0.358 87 433 ZMAT3 64393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178748788 178748788 + Splice_Site SNP C C G TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GATTTTTACCCTAGAAATAAA 0.398 44 77 AFP 174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 74303981 74303981 + Missense_Mutation SNP A A C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CAATTGAGAAACCCACTggag 0.363 23 121 SPZ1 84654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 79616896 79616896 + Missense_Mutation SNP G G A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TAATGGAGTCGGTTTCCAAAC 0.413 71 130 GPR98 84059 hgsc.bcm.edu;ucsc.edu 37 5 89914934 89914934 + Missense_Mutation SNP C C A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CTTGGATGGCCAAGGACTGTT 0.259 5 27 TRIM52 84851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 180687093 180687093 + Missense_Mutation SNP T T C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GGCCTCTTTGTCCACCTCACA 0.542 108 171 UTRN 7402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 144872125 144872125 + Missense_Mutation SNP C C T rs114254210 byFrequency TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CTTAGAACAGCGCCATCCTCA 0.338 46 116 COG5 10466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107002756 107002756 + Silent SNP T T C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TATTTACCTGTCCACAAACAG 0.393 12 91 AGK 55750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 141301025 141301025 + Missense_Mutation SNP A A C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b ACTCTATTTGAAAAAAATGCT 0.363 25 154 KCNV1 27012 hgsc.bcm.edu;broad.mit.edu 37 8 110984685 110984685 + Missense_Mutation SNP G G A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CACCTGTCCCGCACACACAGG 0.532 12 181 C9orf114 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131586077 131586077 + Missense_Mutation SNP G G C TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b TGACGTACAGGTCAAAGAGGA 0.642 4 10 ZFX 7543 hgsc.bcm.edu;broad.mit.edu 37 X 24229263 24229263 + Nonsense_Mutation SNP C C T TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GGGATTTAGGCAACAGAGTGA 0.408 11 181 HEATR2 54919 broad.mit.edu;ucsc.edu 37 7 813720 813720 + Missense_Mutation SNP A A G TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b GTGACAAAGGACATCCTGGCC 0.642 56 158 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939929 76939930 + Frame_Shift_Ins INS - - A TCGA-E1-5303-01A-01D-1468-08 TCGA-E1-5303-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx c4fecec7-4ee8-4b07-be22-6f816260f0b0 8f5ce4b8-2c8d-4411-b159-0035f461c34b CCAAGTCCAACAAAGGCTCTGG 0.381 232 123