Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PLCE1 51196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96005955 96005955 + Missense_Mutation SNP G G T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 ATAGCACCTTGACCTGGGTAA 0.552 29 31 ENTPD7 57089 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 101464242 101464242 + Silent SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GACAAGCCCATGGTAGCTGGT 0.458 39 77 AMER2 219287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 25743874 25743874 + Silent SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TCCTGGAGGGTTGCTGGTGCA 0.557 74 121 SLC7A7 9056 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23282566 23282566 + Silent SNP C C T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 AGGTTTCCACCTCAGGCTGGG 0.562 44 84 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 48764791 48764791 + Silent SNP G G A rs112375043 TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 AGCCCATGTCGCATTCACAGC 0.527 74 113 ADAMTSL3 57188 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 84373247 84373247 + Missense_Mutation SNP G G T rs77028575 byFrequency TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CTCACTTATCGCTATGATGAC 0.453 71 119 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89386881 89386881 + Splice_Site SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GCTACACAGGTGGGGCACGGC 0.607 13 118 WDR81 124997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 1636086 1636086 + Missense_Mutation SNP A A G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CACCCTGGAGATGGCATACAC 0.627 22 30 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578524 7578524 + Missense_Mutation SNP G G C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TTGGCCAGTTGGCAAAACATC 0.562 59 17 TXNDC2 84203 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 9886961 9886961 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CCCAAGCTGGGCAATATTCCC 0.562 86 158 MAG 4099 hgsc.bcm.edu;broad.mit.edu 37 19 35793494 35793494 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GGTCATCTACGAGAGCGAGCT 0.587 10 108 TEX101 83639 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 43922452 43922452 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 ACTCAACCTCGAAAGACTGAA 0.498 54 87 WARS2 10352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 119576827 119576827 + Silent SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CAACAGGAACGTGTGTGGACC 0.433 30 57 CD1B 910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158298792 158298792 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TGAGCCAATGGAGGTGGGGTT 0.463 18 44 ARHGAP30 257106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 161019353 161019353 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TGAGCTGCTTGAGTCCTCTAG 0.647 71 126 ADSS 159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 244581040 244581040 + Silent SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TTGTTTGTAATAATTCTCCAA 0.363 23 28 VPS16 64601 hgsc.bcm.edu;ucsc.edu 37 20 2844632 2844632 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GATGTGGCTCGAGCCATTAAC 0.567 50 108 NFATC2 4773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 50091994 50091994 + Splice_Site SNP C C T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CCAGCCCTTACGTTGCCCTCA 0.567 28 109 CRYBB2 1415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 25623853 25623853 + Silent SNP C C T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 ACTGCAAGGGCGAGCAGTTTG 0.587 48 89 GAS2L1 10634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 29704343 29704343 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CGCCCGGCCCGAGGTGTGGCC 0.692 7 25 RSAD2 91543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 7027291 7027291 + Nonsense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CCTGTCCGCTGGAAAGTAAGT 0.378 17 43 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 ATAAGCATGACGACCTATGAT 0.393 28 46 MORC1 27136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 108788570 108788570 + Missense_Mutation SNP A A C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TACAGAACAGATGTGTAGGCT 0.378 26 41 SLCO2A1 6578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 133670173 133670173 + Missense_Mutation SNP A A G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GTCACCCGGGACCAAGTTAAC 0.478 15 56 ENPEP 2028 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 111397844 111397844 + Nonsense_Mutation SNP C C T rs143343563 TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GAAAAACTTTCGACTGCCGGA 0.612 16 124 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 123140536 123140536 + Silent SNP A A G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TGGATTTTGAAGAGGTTATCT 0.353 67 115 PHF17 79960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 129782915 129782915 + Silent SNP C C T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TTGACCGGGGCCTGGAGATGA 0.478 61 116 MAP3K1 4214 hgsc.bcm.edu;broad.mit.edu 37 5 56178277 56178277 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CATGACACTTGATCTGAACAG 0.453 6 77 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 2954958 2954958 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 ATGCGGACCCGCTCGTTGCTG 0.592 37 86 FKBP6 8468 hgsc.bcm.edu;broad.mit.edu 37 7 72755293 72755293 + Missense_Mutation SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CCTGACTGAGTATCAAAAGGC 0.463 25 319 AKAP9 10142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 91631134 91631134 + Nonsense_Mutation SNP G G T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TAGTCACGAAGAAGAGCTTTC 0.328 48 65 GJC3 349149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 99526519 99526519 + Missense_Mutation SNP T T G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GGTTGCTTTCTTGTGTCTTCT 0.483 21 75 SLC39A4 55630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145639357 145639357 + Silent SNP C C G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GGTCCCTGGGCAGCAGGAGAT 0.652 17 11 ZNF711 7552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 84525047 84525047 + Missense_Mutation SNP A A G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CAGAAGTAGTACAGCAGCACA 0.348 21 60 DCAF12L2 340578 hgsc.bcm.edu;broad.mit.edu 37 X 125298904 125298904 + Missense_Mutation SNP C C G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CTGGCGCTGGCGCGGATCCAG 0.627 11 164 MAGEA8 4107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 149013642 149013642 + Missense_Mutation SNP C C A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 GATCAGAGTACGCCCAAGACC 0.592 36 62 HCFC1 3054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153225450 153225450 + Missense_Mutation SNP G G C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 AGATGGGACCGGATTGGGTGT 0.637 35 116 MIR223 407008 broad.mit.edu;ucsc.edu 37 X 65238753 65238753 + RNA SNP T T G TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TTTGACAAGCTGAGTTGGACA 0.532 8 8 ACTN3 89 broad.mit.edu;ucsc.edu 37 11 66330634 66330634 + RNA SNP C C T TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TGGCCTTCTCCAGTGCCCTCT 0.627 39 43 MIR223 407008 broad.mit.edu;ucsc.edu 37 X 65238789 65238789 + RNA SNP T T C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TGTCAGTTTGTCAAATACCCC 0.542 8 8 MIR223 407008 broad.mit.edu;ucsc.edu 37 X 65238776 65238776 + RNA SNP G G C TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CCATGTGGTAGAGTGTCAGTT 0.542 8 7 KRT31 3881 broad.mit.edu;ucsc.edu 37 17 39552727 39552727 + Missense_Mutation SNP G G A TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 CTCCACCTGGGCCTCCAGGTC 0.587 27 63 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76778782 76778782 + Frame_Shift_Del DEL A A - TCGA-DU-A5TU-01A-11D-A289-08 TCGA-DU-A5TU-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx f3dc5060-12ac-4f66-a901-9e16d447c00d 250e55c2-d5e7-4998-9ec1-0de7b97157f9 TTCTTCAGTCAACTCTTCTTC 0.373 48 147