Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count AKR1C1 1645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 5008161 5008161 + Missense_Mutation SNP G G A rs1138575 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GCTGGCTTCCGCCATATTGAT 0.438 23 52 SIGIRR 59307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 406533 406533 + Silent SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AATCGGAGGAAGGAGTCTGGG 0.652 38 69 PGR 5241 hgsc.bcm.edu;ucsc.edu 37 11 100996789 100996789 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GTAAGGACACCATAATGACAG 0.453 11 60 CD163L1 283316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7586119 7586119 + Missense_Mutation SNP C C T rs146684411 byFrequency TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TTGTCCAAAACGAAACATGGC 0.478 14 67 CLEC9A 283420 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 10205329 10205329 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GTGGGATAGCCCAGCACCAGA 0.418 13 55 PDZRN4 29951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 41900316 41900316 + Missense_Mutation SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GCTTTTCGCAATGCCAAGGAG 0.473 10 49 PDZRN4 29951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 41900459 41900459 + Missense_Mutation SNP C C G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TCTGGCCAAGCTTCGTCCACC 0.488 13 67 BBS10 79738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 76741233 76741233 + Missense_Mutation SNP A A T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTTCCACAAAAGTATGCTTCT 0.353 9 28 NAV3 89795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 78444669 78444669 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CGACTTCAGGCGGGAGATGCT 0.572 24 32 MGAT4C 25834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 86374058 86374058 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CATGGCATCACGCCAGGAAGA 0.398 25 74 SNURF 8926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 25213099 25213099 + Missense_Mutation SNP G G A rs142583293 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TACCCGAGGCGTTCTCAGCAG 0.413 37 79 MAN2C1 4123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 75655059 75655059 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GGCACATTTCCTCACAGTCTC 0.617 11 30 ITGAX 3687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 31391362 31391362 + Silent SNP G G A rs148941060 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ACTTCCTGGCGCACATTCAGA 0.547 9 45 PHKB 5257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 47694709 47694709 + Silent SNP C C T rs17853186 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AACCCACCCACGAAATTCTTC 0.478 30 77 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 18023395 18023395 + Silent SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CGTATGCCCACGCCATGGATG 0.667 16 64 STAT3 6774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40500443 40500443 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CAGAAACTGCCGCAGCTCCAT 0.483 28 57 CD209 30835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7811372 7811372 + Missense_Mutation SNP G G A rs151250046 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AGCCAAGAGCGTGAAGGAGAG 0.647 40 122 ZNF560 147741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 9577542 9577542 + Missense_Mutation SNP C C T rs148650284 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CATGGAATTTCGAAAGGAATT 0.378 39 131 PGLYRP2 114770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15586704 15586704 + Silent SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GGTCCAAAAGCGTAAAGGTCC 0.617 16 66 SIGLEC6 946 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 52034027 52034027 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GTCCTGGGGCCGTGGGGTGAT 0.637 40 83 ZNF845 91664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 53848775 53848775 + Missense_Mutation SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TTGACATTCAGGGATGTGGCC 0.443 51 120 LAIR2 3904 hgsc.bcm.edu;broad.mit.edu 37 19 55019286 55019286 + Missense_Mutation SNP C C A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GAGTCAGAGGCCAGATTCCAC 0.502 6 106 ZSCAN18 65982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 58601354 58601354 + Missense_Mutation SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GAACTGCTCCAGCACCAGCAG 0.677 33 100 PLEKHG5 57449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 6534096 6534096 + Missense_Mutation SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTCTCCCGGCGGCTCTGGGCG 0.701 7 25 IL22RA1 58985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24463673 24463673 + Silent SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ACCGGCCTCCCGCACTGACAG 0.612 27 56 PTAFR 5724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 28477144 28477144 + Missense_Mutation SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ACGCTTGCGGGTGTTGGCCTG 0.557 67 89 OR10R2 343406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158449814 158449814 + Silent SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CCCTCTTTGTAGTTTTTCTTT 0.448 46 44 FAM129A 116496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 184764460 184764460 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TGGGAGCTCCCCCTCCATGGG 0.657 31 136 NFASC 23114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 204946828 204946828 + Silent SNP T T A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CCACTCCAACTAACCGTTTGG 0.547 20 31 CBLN4 140689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 54578992 54578992 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTCGTGGTTGGTGCTCCGCAC 0.652 66 213 KRTAP10-5 386680 hgsc.bcm.edu;broad.mit.edu 37 21 46000163 46000163 + Missense_Mutation SNP C C G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 gggcaggcagcacacaggctt 0.652 63 97 ITGB2 3689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 46320364 46320364 + Silent SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CCAGCAGCCGCGTGACGTTGC 0.657 45 71 DRC1 92749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26644262 26644262 + Missense_Mutation SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GAGATAAAGCGTCAAAGGTAA 0.493 8 28 KCNAB1 7881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 155838415 155838415 + Silent SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TGGCAGCCCGGACAGGGGCAG 0.502 55 130 ACTRT3 84517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 169487113 169487113 + Missense_Mutation SNP T T C TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AGGTACCTGATGAACAGCGAG 0.701 10 14 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178916944 178916944 + Missense_Mutation SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CCGTGAAGAAAAGATCCTCAA 0.333 17 47 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936094 178936094 + Missense_Mutation SNP C C G rs121913286 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AATCACTGAGCAGGAGAAAGA 0.358 6 26 LIMCH1 22998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 41682066 41682066 + Missense_Mutation SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GAAGAGTGGGAAAAGGCCCAA 0.448 9 24 TLR2 7097 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 154625007 154625007 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CAATCCGGAGGCTGCATATTC 0.338 14 56 CETN3 1070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 89701540 89701540 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TTTCCCTGTGGCTTCTCTGTC 0.343 12 28 KCTD16 57528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 143586601 143586601 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GACTGAAAAGGGAAGCTGAAT 0.468 31 36 MCHR2 84539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100390944 100390944 + Silent SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTGCCCAAAGGCCCAAATTGA 0.468 40 85 EPB41L2 2037 hgsc.bcm.edu;broad.mit.edu 37 6 131188677 131188677 + Silent SNP T T C rs145251245 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTGTCCTTTGTGAGGCATCAG 0.408 5 67 EGFR 1956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 55221822 55221822 + Missense_Mutation SNP C C T rs149840192 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AGCTTTGGTGCCACCTGCGTG 0.592 60 75 REPIN1 29803 hgsc.bcm.edu;ucsc.edu 37 7 150069850 150069850 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TCGCACCGGCGCATCCACACG 0.677 29 120 OR13C8 138802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 107331778 107331778 + Silent SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TGGGGGCCACGGAGTGCATGA 0.502 27 58 MAGEB16 139604 hgsc.bcm.edu;broad.mit.edu 37 X 35820627 35820627 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ACATCAGACCCCAGGAATGTG 0.468 10 14 SLITRK4 139065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 142717376 142717376 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AACTGATCAAGGACCCCACTG 0.483 68 81 SOHLH1 402381 broad.mit.edu;ucsc.edu 37 9 138590205 138590205 + Silent SNP G G A rs145506287 byFrequency TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GCCCCAGGGCGCTGGCAAGCC 0.657 94 90 RPS6KA6 27330 broad.mit.edu;ucsc.edu 37 X 83319382 83319382 + Missense_Mutation SNP A A G TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTTGTGAGTCAGGGCAGAGTA 0.418 7 12 MIA2 117153 broad.mit.edu;ucsc.edu 37 14 39722040 39722040 + Silent SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ATGAAAATTCGAAACCATCAG 0.378 8 33 IFRD2 7866 broad.mit.edu;ucsc.edu 37 3 50327154 50327154 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 TGGATGTCAGCGGCAGCCACG 0.617 4 4 ABCC10 89845 broad.mit.edu;ucsc.edu 37 6 43403588 43403588 + Missense_Mutation SNP C C T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 GTCCTTGGACCGGATCCAGCT 0.567 24 59 EMR1 2015 broad.mit.edu;ucsc.edu 37 19 6937659 6937659 + Splice_Site SNP G G A TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CTTCCAAGACGGTGAGAGACT 0.582 31 72 UGT2B10 7365 broad.mit.edu;ucsc.edu 37 4 69688108 69688108 + Missense_Mutation SNP G G T TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 CCCTTGCCAAGATCCCACAAA 0.413 39 133 CREB3 10488 broad.mit.edu;hgsc.bcm.edu 37 9 35733420 35733422 + In_Frame_Del DEL GAG GAG - TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 ACTGACAGATGAGGAGAAGAGTC 0.493 13 23 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7578539 7578555 + Splice_Site DEL TGAGGGCAGGGGAGTAC TGAGGGCAGGGGAGTAC - rs137852792 TCGA-DU-A5TT-01A-11D-A289-08 TCGA-DU-A5TT-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx eca59413-85e3-423a-badd-9f2ff3204e0e 86f70085-f53b-486b-ad93-2ebd54e3df35 AACATCTTGTTGAGGGCAGGGGAGTACTGTAGGAAGA 0.548 14 23