Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count PA2G4 5036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 56504345 56504345 + Silent SNP C C T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TCTTTCAGGCCAAGGATGCAG 0.463 32 47 BTBD11 121551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 108012060 108012060 + Missense_Mutation SNP G G A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TGCGCCAGCCGCAACAGCAAG 0.597 27 69 EVL 51466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 100551166 100551166 + Missense_Mutation SNP G G A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CTTCAGAGTCGTTGGAGTCAA 0.532 47 55 OCA2 4948 hgsc.bcm.edu;broad.mit.edu 37 15 28273113 28273113 + Missense_Mutation SNP A A T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CTCCCTGCTTAGCAGGTATCT 0.552 13 156 HERC2 8924 hgsc.bcm.edu;broad.mit.edu 37 15 28473408 28473408 + Missense_Mutation SNP T T C TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CATGCCGGAATTGAGCAGAAG 0.592 7 68 FES 2242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 91437242 91437242 + Silent SNP C C T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GGGCCTCCCCCTATCCCAACC 0.607 198 329 ATF7IP2 80063 hgsc.bcm.edu;broad.mit.edu 37 16 10551310 10551310 + Nonsense_Mutation SNP G G T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TGTGAATTATGAGCCTTCTAA 0.323 12 117 ITGAE 3682 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3656701 3656701 + Silent SNP C C T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CAGGGCACAGCTCAGAGCCAA 0.582 13 83 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577094 7577094 + Missense_Mutation SNP G G A rs28934574 TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TCTGTGCGCCGGTCTCTCCCA 0.557 36 6 SPPL2C 162540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 43922533 43922533 + Silent SNP G G T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CCAGCCAGCGGCCCCTCCGCC 0.682 14 74 MRPS26 64949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 3027057 3027057 + Missense_Mutation SNP A A G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d AAGGTGCACGAGGCCCGAGCC 0.701 13 27 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d ATAAGCATGACGACCTATGAT 0.393 21 48 DRD5 1816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 9784116 9784116 + Missense_Mutation SNP C C T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GATGACTCAGCGCATGGCCTT 0.607 6 52 FGG 2266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155530846 155530846 + Missense_Mutation SNP T T A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GAATTGCTGGTTAGCTTTCAG 0.388 43 52 UGT3A1 133688 hgsc.bcm.edu;broad.mit.edu 37 5 35954579 35954579 + Splice_Site SNP A A G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GCCGACTTGTACCTGTTGGCG 0.552 6 48 GABRB2 2561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 160758095 160758095 + Missense_Mutation SNP T T C TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TTCCCGGAGGTGGGTGTTGAT 0.423 20 126 PON1 5444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 94940783 94940783 + Silent SNP G G T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GTTTATGTCTGATGGTTTTTA 0.383 32 57 CBLL1 79872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 107398758 107398758 + Missense_Mutation SNP A A G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TCACTTGAAAATGTTCATCCT 0.468 92 134 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 131848943 131848943 + Silent SNP G G A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GCTTGTCCTCGCTCAAGGAGT 0.607 10 72 CNOT4 4850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 135048807 135048807 + Missense_Mutation SNP A A G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CTCTCTACAGAACTGCTGTTG 0.388 47 126 TAF2 6873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 120768315 120768315 + Missense_Mutation SNP T T G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d ATGTTCTTAGTAAATGGTGGG 0.348 7 66 EIF1AX 1964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 20156713 20156713 + Missense_Mutation SNP C C T TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CTCATTCTTACCCCTGCGTCT 0.308 25 9 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76938407 76938407 + Nonsense_Mutation SNP G G A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GAACTTTTTCGTTTCCTTTTT 0.338 47 13 TBC1D8B 54885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 106083910 106083910 + Silent SNP T T C TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GTGCTGTTAATGACATGGCTA 0.358 30 33 TEKT4P2 100132288 broad.mit.edu;ucsc.edu 37 21 9907312 9907312 + RNA SNP G G A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CACTTCTGGCGGTCGATGAAG 0.582 9 45 MPP7 143098 broad.mit.edu;ucsc.edu 37 10 28378749 28378749 + Missense_Mutation SNP C C T rs145943944 byFrequency TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d TCTACTAAGACGAAAACTTTT 0.313 10 37 TNC 3371 broad.mit.edu;ucsc.edu 37 9 117826102 117826102 + Missense_Mutation SNP T T A TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GAGAGAGGGGTTGTGCTGAAG 0.522 21 107 OXSM 54995 broad.mit.edu;ucsc.edu 37 3 25833094 25833094 + Nonsense_Mutation SNP C C T rs147184138 TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d GGTCAGCATTCGATATAAACT 0.433 11 69 GNAI1 2770 broad.mit.edu;ucsc.edu 37 7 79818476 79818476 + Missense_Mutation SNP A A G TCGA-DU-A5TP-01A-11D-A289-08 TCGA-DU-A5TP-10A-01D-A289-08 Untested Somatic Phase_I WXS none Illumina GAIIx 2d307950-3327-4ac5-95e4-5941a28fb077 dba5aeaa-a6d1-4f01-a963-e6d523f8783d CAGTAACACCATCCAGTCAAT 0.398 6 23