Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SLC39A12 221074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 18276464 18276464 + Missense_Mutation SNP A A G TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CATGCTGGGGACAGCGCTGGT 0.557 7 91 ARHGAP19-SLIT1 100533184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 98924609 98924609 + Missense_Mutation SNP T T C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CGCAAAGTCATTCTTATGGAT 0.622 102 119 OR56A1 120796 hgsc.bcm.edu;broad.mit.edu 37 11 6048480 6048480 + Missense_Mutation SNP C C A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a AATGAAGACACTAGCTTTGGC 0.493 8 131 ARHGAP32 9743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 128840324 128840324 + Missense_Mutation SNP C C T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CTGCACTCTCCGGATGGTAGG 0.552 31 75 IGF1R 3480 hgsc.bcm.edu;broad.mit.edu 37 15 99456347 99456347 + Missense_Mutation SNP A A G rs45481994 TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GTGGACGTGGACCTCCCGCCC 0.537 4 50 SLC9A5 6553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 67304913 67304913 + Silent SNP C C T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CCCTCTCCACCTACCTTCTGA 0.657 17 54 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GCACAAACACGCACCTCAAAG 0.542 19 3 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu 37 17 15943763 15943763 + Missense_Mutation SNP G G C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a ACCTGACGTAGTAACTGCTGG 0.358 4 61 BCL2L15 440603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 114424577 114424577 + Missense_Mutation SNP T T C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GCACACCAGGTCTTGCTGAGA 0.468 7 55 RNPEP 6051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 201972432 201972432 + Silent SNP G G T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a TCTCCCCTGGGGACTCACTCA 0.562 27 79 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 215987173 215987173 + Missense_Mutation SNP A A G TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a AGAATTCAGAACAAACGGGAT 0.433 8 65 GNPAT 8443 hgsc.bcm.edu;broad.mit.edu 37 1 231403559 231403559 + Missense_Mutation SNP C C T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GCTTCAGAACCGGCCATCCAT 0.458 4 60 TTLL9 164395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 30486368 30486368 + Splice_Site SNP A A C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GAAGTGAAGGAGTAAGACCCT 0.562 25 44 SEZ6L 23544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 26707829 26707829 + Missense_Mutation SNP A A G TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a AGTGGAGTTCACCTGCGACCC 0.562 93 213 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a ATAAGCATGACGACCTATGAT 0.393 50 77 SPP2 6694 hgsc.bcm.edu;broad.mit.edu 37 2 234978646 234978646 + Missense_Mutation SNP G G T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a AATAAATACTGACTTTGAGTA 0.443 4 67 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241683359 241683359 + Splice_Site SNP C C T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GGGCGCTAACCTGAGCACGTC 0.592 14 112 TRIM15 89870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 30138295 30138295 + Missense_Mutation SNP T T C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a ATGAAGACTTTTGTGAGTCCT 0.458 9 82 CD109 135228 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 74472143 74472143 + Silent SNP G G A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GAGACGTAACGCTTACATTTT 0.294 8 56 WBSCR17 64409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 70886066 70886066 + Missense_Mutation SNP G G A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CTGGTGGGACGCCGGAGACCC 0.597 11 40 SEMA4D 10507 hgsc.bcm.edu;broad.mit.edu 37 9 91994102 91994102 + Silent SNP C C T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a TGCCGGTGGGCGCAGGCTTGG 0.617 5 67 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76940087 76940087 + Splice_Site SNP T T C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GCACACCACCTGAAATGTTTT 0.333 48 117 CXorf48 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 134303695 134303695 + Silent SNP G G C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a TTGTCAACTGGGTGTCACCTA 0.433 21 39 MCF2 4168 hgsc.bcm.edu;broad.mit.edu 37 X 138689854 138689854 + Missense_Mutation SNP T T G TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GGATACTTCTTTAAAACATCC 0.373 5 64 GPR180 160897 broad.mit.edu;ucsc.edu 37 13 95275437 95275437 + Silent SNP G G C TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a ACTTAGCAGGGATCCTCCTAA 0.388 21 186 MYO15A 51168 broad.mit.edu;ucsc.edu 37 17 18064731 18064731 + Missense_Mutation SNP G G A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CCTCCAAGACGTGAGCCGGAC 0.632 13 159 KRT16P2 400578 broad.mit.edu;ucsc.edu 37 17 16734855 16734855 + RNA SNP C C T rs688852 by1000genomes TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a CACAGTCTGCCGCAGGGCCAG 0.632 7 52 PAX4 5078 broad.mit.edu;ucsc.edu 37 7 127251252 127251252 + Missense_Mutation SNP G G A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GGCTGTGGGGGCAAGTGGCCT 0.572 3 4 RANBP9 10048 broad.mit.edu;ucsc.edu 37 6 13711709 13711709 + Missense_Mutation SNP G G T TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a ctgctgctgcggcggcggcgg 0.761 2 8 ZNF41 7592 broad.mit.edu;ucsc.edu 37 X 47315320 47315320 + Splice_Site SNP C C A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a GCTCACTCACCTGAACAGCTC 0.522 8 85 ZNF567 163081 broad.mit.edu;ucsc.edu 37 19 37210750 37210750 + Missense_Mutation SNP G G A TCGA-DU-8166-01A-11D-2253-08 TCGA-DU-8166-10A-01D-2253-08 Untested Somatic Phase_I WXS none Illumina GAIIx ae60b340-7cc9-4ebd-85a7-dc2ec942782c c00bb1d9-268d-49d4-bb00-5bc37b9d3f7a AAGTCCTTCCGCCAGAAGACA 0.443 6 84