Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NELL1 4745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 20950023 20950023 + Missense_Mutation SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 AAGGTCTGCCGACGTAAGTAC 0.488 34 61 SLCO1A2 6579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 21422506 21422506 + Silent SNP A A G TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TCAATTCATCATCTTTCAAAA 0.308 41 71 FAM124A 220108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 51825705 51825705 + Missense_Mutation SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 CATCGACAACGTCCTGGCGTG 0.682 9 17 TPPP2 122664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 21498757 21498757 + Missense_Mutation SNP A A C TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TCAGAGGCAGAAAAAACATTC 0.522 4 27 PLEKHG3 26030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65198857 65198857 + Missense_Mutation SNP G G C TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 ACCACATCAAGAGGCTCATCC 0.557 10 109 ATP6V1D 51382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 67807223 67807223 + Missense_Mutation SNP C C T rs144396308 byFrequency TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 ACGTTCAATCCGGGGAATGAT 0.328 36 67 HAS3 3038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 69148261 69148261 + Missense_Mutation SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 CAACAAGTACGACTCATGGAT 0.557 103 160 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A rs121913343 TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GCACAAACACGCACCTCAAAG 0.542 24 19 PNPLA6 10908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 7606923 7606923 + Missense_Mutation SNP C C T TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TCTGCTGAGCCGCTGCGTCTC 0.642 37 55 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 19510670 19510670 + Splice_Site SNP C C T TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GACCTAAGAACTGAAAGGAAC 0.378 8 69 ARID1A 8289 hgsc.bcm.edu;broad.mit.edu 37 1 27087503 27087503 + Nonsense_Mutation SNP C C T TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GCCTGGCATCCGAGGCCCTTC 0.602 9 129 ADAM30 11085 hgsc.bcm.edu;broad.mit.edu 37 1 120437550 120437550 + Silent SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 AATTCCCGTCGCAGTACTCTG 0.483 15 85 IL10 3586 hgsc.bcm.edu;ucsc.edu 37 1 206944736 206944736 + Silent SNP A A G TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TTTAACAACAAGTtgtccagc 0.488 9 16 CBY1 25776 hgsc.bcm.edu;broad.mit.edu 37 22 39067165 39067165 + Missense_Mutation SNP G G A rs140554782 TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 AATCTCTTGCGGCTGAAAGTG 0.562 8 142 DAPL1 92196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 159660849 159660849 + Silent SNP A A G TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 CCTTGGAAAGACATACCAAAA 0.378 9 10 TTN 7273 hgsc.bcm.edu;broad.mit.edu 37 2 179592377 179592377 + Missense_Mutation SNP T T C TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GCAAGTATACTGTCCAGTCTT 0.418 15 261 SP140 11262 hgsc.bcm.edu;broad.mit.edu 37 2 231108509 231108509 + Missense_Mutation SNP C C T TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TTGAGCTCCTCGCCAAGGTGT 0.488 8 87 C3orf58 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 143708579 143708579 + Missense_Mutation SNP G G C TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 CCGGCTCGAGGCCTTGCTGGA 0.507 33 64 ATG5 9474 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 106727551 106727551 + Missense_Mutation SNP T T C TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TGCAATCCCATCCAGAGTTGC 0.303 23 30 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu 37 9 134501730 134501730 + Silent SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 ACGGGCTAAGGTTCCAGGCCG 0.567 7 80 RAPGEF1 2889 hgsc.bcm.edu;broad.mit.edu 37 9 134501807 134501807 + Missense_Mutation SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GGATCATAGTGGTCTGCAGTT 0.592 8 127 MECP2 4204 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153297774 153297774 + Silent SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GGTCACGGATGATGGAGCGCC 0.617 57 14 PRNT 149830 broad.mit.edu;ucsc.edu 37 20 4713271 4713271 + Missense_Mutation SNP G G A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 aggtggagaagatgggaaaga 0.478 7 5 IDH1 3417 broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G C rs121913499 TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 TAAGCATGACGACCTATGATG 0.398 38 69 PPP6R2 9701 broad.mit.edu;ucsc.edu 37 22 50875937 50875937 + Silent SNP C C A TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 cctcccAGGCCTTCTCTGACT 0.557 4 38 AKR7L 246181 broad.mit.edu;ucsc.edu 37 1 19595113 19595113 + RNA SNP T T G TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GCCGAGGTCATGCTGGGAGCG 0.632 22 56 MAP3K1 4214 broad.mit.edu;ucsc.edu 37 5 56181765 56181765 + Missense_Mutation SNP C C T TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 ATAGGGGGATCGGTGGCTCAT 0.343 26 41 NR4A1 3164 broad.mit.edu;hgsc.bcm.edu 37 12 52451162 52451164 + In_Frame_Del DEL TCT TCT - TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GGCAAGCTCATCTTCTGCTCAGG 0.611 38 76 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7579311 7579311 + Splice_Site DEL C C - rs68140816 TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 GGGCAACTGACCGTGCAAGTC 0.532 47 60 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76889091 76889091 + Frame_Shift_Del DEL T T - TCGA-DU-7304-01A-12D-2086-08 TCGA-DU-7304-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx 14f6d3a9-9f7d-4ac3-bef2-23a6ca0413fc b95bb15a-325a-459a-aadc-d4f68cee6a65 CTCTTGCCACTTCTCAAATTC 0.318 46 14