Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count WDR96 80217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105990414 105990414 + Missense_Mutation SNP G G A TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TTTAGCTTCCGGTCAGAAAAA 0.423 56 71 OR4A16 81327 hgsc.bcm.edu;broad.mit.edu 37 11 55111136 55111136 + Missense_Mutation SNP T T G TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TTTTGTGCACTCTGTGGTTCA 0.453 11 171 NLRX1 79671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 119050958 119050958 + Missense_Mutation SNP G G A rs151306288 TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GCTGGGCTGCGCACACTCCTG 0.612 96 53 CLEC9A 283420 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 10215755 10215755 + Missense_Mutation SNP T T C TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TCAAGAGAATTGTTTAAAGGA 0.368 10 114 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578524 7578524 + Missense_Mutation SNP G G C TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TTGGCCAGTTGGCAAAACATC 0.562 82 4 DOCK7 85440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 62995074 62995074 + Silent SNP A A G TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CTGGAGAGTAAATTGTGTACC 0.408 44 71 CCDC19 25790 hgsc.bcm.edu;broad.mit.edu 37 1 159842834 159842834 + Missense_Mutation SNP G G A rs148876212 byFrequency TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GTGGCAATCCGGTTCTGCACT 0.597 8 109 PPFIA4 8497 hgsc.bcm.edu;broad.mit.edu 37 1 203025938 203025938 + Missense_Mutation SNP C C G TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GGCAGCAACCCCAGCAGCAGC 0.562 4 11 CHEK2 11200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 29090043 29090043 + Missense_Mutation SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TGTCTTAAGGCTTCTTCTGTC 0.488 115 168 WDR33 55339 hgsc.bcm.edu;broad.mit.edu 37 2 128477431 128477431 + Missense_Mutation SNP G G A TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CTGAGGGCCAGGCGGGCCTTG 0.632 6 95 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152383461 152383461 + Missense_Mutation SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TTCCTGAGGGCGAGCACCGTG 0.463 7 12 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 ATAAGCATGACGACCTATGAT 0.393 44 92 GOLGA4 2803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 37369109 37369109 + Missense_Mutation SNP A A G TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TCCAAATCACATTTGGTCCAA 0.403 56 56 AMACR 23600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 33989379 33989379 + Missense_Mutation SNP A A G TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GCGGGGGCTCACGTCCTGCTC 0.507 49 100 OR10C1 442194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 29408070 29408070 + Missense_Mutation SNP G G A TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CACATCTCTCGCTCTGGATGT 0.587 57 82 ZNF425 155054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 148809259 148809259 + Missense_Mutation SNP T T A TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GTATTCTTCATGTTCAACTGT 0.363 18 226 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu 37 8 35583683 35583683 + Silent SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 ACTCCCTGCTCCTGAATTCTG 0.502 10 150 FBXO43 286151 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 101146458 101146458 + Silent SNP T T C TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TCAAAACTTCTCCCCAGGGAG 0.408 65 70 LAMC3 10319 hgsc.bcm.edu;broad.mit.edu 37 9 133942444 133942444 + Silent SNP C C T rs145571152 byFrequency TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GTAGCGGGAACGTGGACCCCA 0.647 5 43 ARHGEF1 9138 broad.mit.edu;ucsc.edu 37 19 42396179 42396179 + Silent SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 ACCACAGCTTCCTGGAGAAGA 0.612 32 37 TRPC6 7225 broad.mit.edu;ucsc.edu 37 11 101375482 101375482 + Missense_Mutation SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CCCCTTCTCACGGAGAACTGT 0.463 76 143 MTHFD2P1 100287639 broad.mit.edu;ucsc.edu 37 3 95374179 95374179 + RNA SNP C C T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GATATTCTAACGGTGGCATCA 0.418 15 27 MEGF8 1954 broad.mit.edu;ucsc.edu 37 19 42857651 42857651 + Silent SNP G G A TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 AACGATGCCGGCCCGGCAGCT 0.682 5 31 MAPK12 6300 broad.mit.edu;ucsc.edu 37 22 50693717 50693717 + Missense_Mutation SNP G G C TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GCAGGGACTCGAAGTAGGGAT 0.612 63 73 PDE6C 5146 broad.mit.edu;ucsc.edu 37 10 95385365 95385365 + Nonsense_Mutation SNP G G T TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CAAGCTTGGAGAAGTAGAGCC 0.413 7 47 DHX30 22907 broad.mit.edu;hgsc.bcm.edu 37 3 47888021 47888023 + In_Frame_Del DEL ATC ATC - TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 CTGCAATGTTATCATCACCCAAC 0.65 64 166 FSTL5 56884 broad.mit.edu;hgsc.bcm.edu 37 4 162697089 162697089 + Frame_Shift_Del DEL T T - TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 TATTTAAACATTTGATCCACC 0.284 47 27 DHX35 60625 broad.mit.edu;hgsc.bcm.edu 37 20 37591029 37591029 + Frame_Shift_Del DEL C C - TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GCCCGTGGGACCGGTGAAGTT 0.721 16 14 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938271 76938272 + Frame_Shift_Del DEL TT TT - TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 actcatgctctttatctctttt 0.337 64 13 NOTCH1 4851 broad.mit.edu 37 9 139393364 139393365 + Frame_Shift_Del DEL AT AT - TCGA-DU-7301-01A-11D-2086-08 TCGA-DU-7301-10A-01D-2086-08 Untested Somatic Phase_I WXS none Illumina GAIIx ba94c29b-b76e-4d67-bf5a-ce6bc45d85f8 536cb58b-852c-491a-94f7-ffbea4c98871 GTTGTTCTGCATATCTTTGTTA 0.609 8 313