Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RHOD 29984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 66834308 66834308 + Missense_Mutation SNP T T C TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TTTGACAACATCTTTAACCGG 0.607 50 99 SLC25A21 89874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 37198737 37198737 + Missense_Mutation SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TGACACATATCCCAGCAATTT 0.318 11 19 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577105 7577105 + Missense_Mutation SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GTCTCTCCCAGGACAGGCACA 0.552 37 8 PIK3R5 23533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 8789796 8789796 + Missense_Mutation SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GGCCTTACCTCGGTCTGATAG 0.667 7 59 CD300LG 146894 hgsc.bcm.edu;broad.mit.edu 37 17 41926022 41926022 + Missense_Mutation SNP G G A rs115182680 by1000genomes TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 AGGGACCACCGGAAGTACTGG 0.577 5 81 GALE 2582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24124673 24124673 + Silent SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GCACCGACTCGCCCACGGCCT 0.557 24 49 CHRM3 1131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 240071460 240071460 + Missense_Mutation SNP A A G TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TGGCACAGCCATCGCTGCTTT 0.453 11 115 MYT1 4661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 62839582 62839582 + Nonsense_Mutation SNP G G T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TGTTATTGTGGAGGTCCGCTC 0.577 57 109 MTIF2 4528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 55479696 55479696 + Missense_Mutation SNP T T C TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TACGACAATGTCAGTGACCTG 0.463 43 60 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 ATAAGCATGACGACCTATGAT 0.393 31 39 SNED1 25992 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 241989284 241989284 + Missense_Mutation SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 AGGCTCCTGCGATGCCCATGA 0.692 21 74 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140181907 140181907 + Silent SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TCAGCGTGTCCGACCGCGACT 0.483 42 89 PRKAR1B 5575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 751125 751125 + Silent SNP G G C TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 CCGAGGGGCAGGCGGGCGGGG 0.647 9 73 ZNF138 7697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 64291898 64291898 + Missense_Mutation SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 CAAAAAGTGACACTGAGCAGA 0.368 15 96 SSPO 23145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 149489167 149489167 + RNA SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 CTTGCCCTCAGGACGGCTGCC 0.627 36 59 MFHAS1 9258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 8654899 8654899 + Missense_Mutation SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GATCACAGTCGGCGTGGGTGG 0.557 20 29 PHB2 11331 broad.mit.edu;ucsc.edu 37 12 7077659 7077659 + Missense_Mutation SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 CGGCAACACTCGTTCCTCGTA 0.567 12 38 RP11-344E13.3 0 broad.mit.edu;ucsc.edu 37 17 20805993 20805993 + RNA SNP A A G TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 CGAACCCGTGAGAGCAGCGGC 0.632 15 0 GPR162 27239 broad.mit.edu;ucsc.edu 37 12 6933476 6933476 + Missense_Mutation SNP G G A TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 ACTGCATGCCGTCATGGGCAT 0.612 30 121 DNAH17 8632 broad.mit.edu;ucsc.edu 37 17 76510921 76510921 + Missense_Mutation SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 AGCTCGCTCACGGCACGCAGG 0.612 28 42 VPS72 6944 broad.mit.edu;ucsc.edu 37 1 151158055 151158055 + Silent SNP C C T TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 AGCTACCAGCCGGGGTGTTGA 0.498 17 205 RERE 473 broad.mit.edu;hgsc.bcm.edu 37 1 8716199 8716200 + Frame_Shift_Del DEL CT CT - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 ACTGTGATCACTCTCAGCATAA 0.465 117 323 CACNA1S 779 broad.mit.edu;hgsc.bcm.edu 37 1 201047179 201047181 + In_Frame_Del DEL TCT TCT - rs9333651 TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 AGCCCGTACATCTTCATCAGCAT 0.571 37 70 OBSL1 23363 broad.mit.edu;hgsc.bcm.edu 37 2 220428315 220428316 + Frame_Shift_Del DEL AT AT - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GCACGAACACATGTTCTCGGGG 0.594 67 98 CCDC6 8030 broad.mit.edu;hgsc.bcm.edu 37 10 61612347 61612349 + In_Frame_Del DEL TTC TTC - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TAGTGAGGAATTCTTCTTCTTTC 0.36 31 65 PCDH9 5101 broad.mit.edu;hgsc.bcm.edu 37 13 67801664 67801665 + Frame_Shift_Del DEL AA AA - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TATTTAAAGCAAAGAGTCTTTT 0.465 37 61 ZC3H7A 29066 broad.mit.edu;hgsc.bcm.edu 37 16 11864798 11864799 + Frame_Shift_Del DEL GA GA - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 GGCATGCTAGGAGAGACACTGG 0.485 29 80 NF1 4763 broad.mit.edu;hgsc.bcm.edu 37 17 29576134 29576134 + Frame_Shift_Del DEL C C - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 ACTGTTTATACCAGGTATGCT 0.403 22 92 NF1 4763 broad.mit.edu 37 17 29541467 29541468 + Splice_Site DEL AG AG - TCGA-DU-7299-01A-21D-2024-08 TCGA-DU-7299-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 23a9a0b4-0a13-4e5b-941b-8174a1c8f301 ee7cefc3-bfbf-4b30-9509-c7b6084b33d4 TTTTGTTTTTAGAGTCTTACAT 0.292 11 21