Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 43597996 43597996 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GAACCGACCCCCAGGCACCTT 0.627 23 20 PTEN 5728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 89692830 89692830 + Missense_Mutation SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AAACCCTTTTGTGAAGATCTT 0.373 48 48 EFEMP2 30008 hgsc.bcm.edu;broad.mit.edu 37 11 65635447 65635447 + Missense_Mutation SNP G G A rs142826827 TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GCTCCGCTCCGAGGTGATGGT 0.627 7 108 AMICA1 120425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 118074285 118074285 + Silent SNP C C G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GGAAAATGTCCCCCACCAGGT 0.507 22 136 STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 103984727 103984727 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GAGTGCCGATCCTGCGCTCTC 0.423 25 76 EFNB3 1949 hgsc.bcm.edu;broad.mit.edu 37 17 7611424 7611424 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TCAGGGCCGGCGCTGTGAGGC 0.602 10 127 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10214497 10214497 + Missense_Mutation SNP G G T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GCTTCCTGAAGATTCTTGCCA 0.443 18 53 ZNF519 162655 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 14106371 14106371 + Silent SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GTATGCCTTGCTCTGGTAAAA 0.333 16 34 ICAM5 7087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 10401990 10401990 + Missense_Mutation SNP C C G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GCGCACACTACAGGCGCGTGG 0.682 32 63 AMPD1 270 hgsc.bcm.edu;ucsc.edu 37 1 115229523 115229523 + Missense_Mutation SNP C C T rs61738827 byFrequency TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TCCTTGGAAACGCTTTTTTCT 0.358 34 57 TMEM206 55248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 212553255 212553255 + Missense_Mutation SNP A A G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GAACTCCTGGAAAGAAGAGAA 0.498 36 94 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 179637874 179637874 + Missense_Mutation SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 ATTTTCTCCCGCGTAAAATGT 0.289 13 38 CELSR3 1951 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 48698353 48698353 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GTCCTTGTCCCGGTCAGTGGC 0.607 9 32 OTOP1 133060 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 4214703 4214703 + Silent SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 CCAGGATGACGGTAATGACTG 0.388 18 35 FBXL7 23194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 15936897 15936897 + Missense_Mutation SNP T T A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 CATCGCGCACTGCGGCCGGGT 0.677 4 9 DMXL1 1657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 118485663 118485663 + Missense_Mutation SNP A A T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TGCTAGTGGAAGCACTACCAG 0.453 17 43 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 127800434 127800434 + Missense_Mutation SNP C C T rs148971572 byFrequency TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AGCTCCAGTGCGGATGTTGGG 0.592 35 64 HIST1H2AC 8334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 26124693 26124693 + Missense_Mutation SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AAGAAGACTCGCATCATCCCG 0.652 51 86 PTCHD4 442213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 47846864 47846864 + Silent SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GCAGGACACTGATGAAGTCAC 0.428 9 19 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 152783987 152783987 + Silent SNP T T C TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AGTCTGTGTATTCCTTCTTCA 0.433 16 68 ARID1B 57492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 157454205 157454205 + Nonsense_Mutation SNP T T A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TGGCTCAGTATGGACCTCAAC 0.463 29 40 PTPRZ1 5803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 121684517 121684517 + Missense_Mutation SNP A A G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TTGAGGCCATACTTAGTAAAG 0.393 36 97 GDF6 392255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 97157718 97157718 + Missense_Mutation SNP C C G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 CAAACAAATACTTCTGTCTCC 0.562 15 34 PGM5 5239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 71098810 71098810 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GATCCCAAGACGACATATTAT 0.512 11 47 OR1L8 138881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 125330525 125330525 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TTGGGGACAACGCTTGTTGTA 0.453 23 46 MED12 9968 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 70351408 70351408 + Missense_Mutation SNP C C A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AGAACTTGGACCAGTGGACCA 0.542 7 54 IL1RAPL2 26280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 105011344 105011344 + Missense_Mutation SNP T T G TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 CTCCAGCCTATACCCTCTATT 0.463 35 83 ARHGEF6 9459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 135862897 135862897 + Missense_Mutation SNP T T A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GAGCCAGGCATGAGTCTGTTG 0.418 73 178 PIEZO2 63895 broad.mit.edu;ucsc.edu 37 18 10691245 10691245 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AAGAGGTTGACGTAATTGTAG 0.488 38 96 OR2B3 442184 broad.mit.edu;ucsc.edu 37 6 29054524 29054524 + Missense_Mutation SNP G G A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TGACCACAGCGTGGCATGTTA 0.488 14 32 SGIP1 84251 broad.mit.edu;ucsc.edu 37 1 67142747 67142747 + Missense_Mutation SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AGCATGGAGTCGCCAAAGTTA 0.403 28 83 ZNF429 353088 broad.mit.edu;ucsc.edu 37 19 21720782 21720782 + Missense_Mutation SNP C C A TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TAAGAAAATTCATAGGATggg 0.458 7 54 PSG9 5678 broad.mit.edu;ucsc.edu 37 19 43766011 43766011 + Splice_Site SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 AAGATACTCACGGAGGAGATT 0.522 91 166 COBL 23242 broad.mit.edu;ucsc.edu 37 7 51287614 51287614 + Silent SNP T T G rs145775268 by1000genomes TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 TTCCAGGAGGTGGGGGAGCAC 0.552 5 40 MXRA5 25878 broad.mit.edu;ucsc.edu 37 X 3229518 3229518 + Silent SNP C C T TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 CAATCTTGGCCGGTTTCATCA 0.517 32 112 RB1 5925 broad.mit.edu;hgsc.bcm.edu 37 13 48919319 48919320 + Frame_Shift_Del DEL TT TT - TCGA-DU-7290-01A-11D-2024-08 TCGA-DU-7290-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 78e1afce-55f4-4924-9fa3-4e5227c2818c a58fe3f9-3bcd-4481-9f8d-4fcf99e84d62 GTTTGCACTCTTCAGCAAATTG 0.287 39 48