Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CYP2C19 1557 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 96612622 96612622 + Missense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GTTGTCAATGGATTTGCTTCT 0.473 46 10 OR9G1 390174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56468437 56468437 + Missense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TGGCGAGAAGGGCGGCTATAA 0.478 25 94 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 117723945 117723945 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CCACACAGCGCGAGGCATTCC 0.562 34 60 ZMYM2 7750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 20635254 20635254 + Missense_Mutation SNP T T C TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CCTGCAGCAATTGAGGAGCTA 0.418 13 8 MYH6 4624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 23855275 23855275 + Silent SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GCCGCTCCACGATGGCGATGT 0.637 21 32 MDGA2 161357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 47426601 47426601 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CTGCATCTCCCAGCTCCAGCT 0.358 14 28 SPTB 6710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 65258514 65258514 + Silent SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TGTTGGCAGCGAGGTTCACAC 0.557 21 24 CASKIN1 57524 hgsc.bcm.edu;broad.mit.edu 37 16 2230409 2230409 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GGCCAGGTCACTGGCCCGCCG 0.716 6 6 CCNF 899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 2499351 2499351 + Missense_Mutation SNP C C A rs151164394 TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GAACCCAGCACCTGTGCAGCT 0.662 13 22 AIPL1 23746 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 6329143 6329143 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 AGTAGGCCTTCACGATGCCTG 0.657 23 5 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578203 7578203 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GGCACCACCACACTATGTCGA 0.537 27 2 SLC16A3 9123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 80195561 80195561 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TGTTCTTCAACGGCCTCGCGG 0.652 32 70 POLR2E 5434 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1090943 1090943 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GCTCCTGCTGCAGAAACTGCT 0.667 14 41 NLRP9 338321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56244772 56244772 + Missense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TCGTCTAGCCGCAGCAGTATA 0.433 37 59 KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 210856965 210856965 + Missense_Mutation SNP C C G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 ACGAGTCTGTCTTCTTCAGTG 0.592 26 59 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 1843079 1843079 + Silent SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 ACCCGGAGGCGCTGCGATGGG 0.632 32 43 NLRC4 58484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 32476671 32476671 + Splice_Site SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TGAAAAAGACCTATTAGAGAA 0.448 23 28 LCT 3938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 136566631 136566631 + Missense_Mutation SNP C C T rs146467199 byFrequency TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TTGATGACGGCGTGGGCTATC 0.552 18 29 PDE11A 50940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 178682596 178682596 + Nonsense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TCAAAAAGTCGTTGATCTGCA 0.378 24 10 FGD5 152273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 14861759 14861759 + Missense_Mutation SNP G G C TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GGGGCTTTGTGTGGCCAGTGT 0.617 18 22 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 52428569 52428569 + Missense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CGGGCTTGGCGAGACATCCTA 0.577 22 38 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 80327904 80327904 + Missense_Mutation SNP A A G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 AAATCGTTCCATCCTGAGAAC 0.507 53 68 ADH1A 124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 100205899 100205899 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 AGTTGCTCTCCGGGTTTTTAC 0.418 18 33 NDST3 9348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 118975505 118975505 + Missense_Mutation SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TCCTGGAATCGAAGCCTTCTA 0.343 18 21 FGA 2243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155507658 155507658 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CCCAGGGTTTCGGTTTCCAGT 0.572 91 112 NUP155 9631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 37364077 37364077 + Missense_Mutation SNP C C G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CATGCAATTACACTGCATATC 0.373 33 44 ZSCAN31 64288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 28294587 28294587 + Missense_Mutation SNP C C G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TTTAAGATTTCTTGCTTTGAT 0.363 24 43 PLAG1 5324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 57079207 57079207 + Silent SNP G G A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 AAGAGGGCACGCCACCTTGTA 0.458 96 74 TLR4 7099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 120475558 120475558 + Silent SNP C C A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GTAGAAATGGCTTGAGTTTCA 0.383 21 31 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135202372 135202372 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CAACTGAGGCCGACTTACAGA 0.368 24 30 P2RY10 27334 hgsc.bcm.edu;ucsc.edu 37 X 78216946 78216946 + Nonsense_Mutation SNP C C A TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TTTATGGCTTCAGAGTTTCGT 0.473 75 9 LUC7L2 51631 broad.mit.edu;ucsc.edu 37 7 139030301 139030301 + Missense_Mutation SNP A A C TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CCAAGCTGCCACCTATCTCTG 0.512 61 68 R3HDML 140902 broad.mit.edu;ucsc.edu 37 20 42979326 42979326 + Missense_Mutation SNP A A G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 GAGTCCCCGTACAAGATGGGA 0.532 33 40 GUCA1B 2979 broad.mit.edu;ucsc.edu 37 6 42162502 42162502 + Silent SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CCTGGAGCTCCGCCACATCTA 0.562 6 8 EDAR 10913 broad.mit.edu;ucsc.edu 37 2 109527457 109527457 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 aggacgatggcgatggccatg 0.577 15 21 MSLNL 401827 broad.mit.edu;ucsc.edu 37 16 823215 823215 + Missense_Mutation SNP A A G TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CTGAGGATGCAGCCATCCAGG 0.632 24 34 TAAR5 9038 broad.mit.edu;ucsc.edu 37 6 132910545 132910545 + Missense_Mutation SNP C C T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CTCCACTGAGCGAATGGTGCT 0.587 27 49 KRT6B 3854 broad.mit.edu;ucsc.edu 37 12 52842747 52842747 + Missense_Mutation SNP T T C TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CTGCAGCTCCTCGTACTGCAG 0.537 36 59 TMPRSS11F 389208 broad.mit.edu;hgsc.bcm.edu 37 4 68925146 68925146 + Frame_Shift_Del DEL G G - TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 CAGTGCTTATGGTTTCCACTC 0.363 21 29 EGFR 1956 ucsc.edu 37 7 55233043 55233043 + Missense_Mutation SNP G G T TCGA-DU-7013-01A-11D-2024-08 TCGA-DU-7013-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx f0eb92a8-7607-4cfb-b2a5-a65aa707a4b7 e7a1b446-ae3d-4f8f-a976-fdaa7902e760 TGCCCGGCAGGAGTCATGGGA 0.567 1620 71