Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ROBO4 54538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 124756934 124756934 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGGGTCAGCACGCTGTCTTGA 0.592 32 38 PZP 5858 hgsc.bcm.edu;broad.mit.edu 37 12 9304243 9304243 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CACTTCTGTCCGGCTCACAGA 0.443 4 43 SACS 26278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 23907744 23907744 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TCCAAATTTTCCAATGCTTAC 0.358 35 89 OR4N2 390429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 20296476 20296476 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TATACCCTTCGCAACCAGGAA 0.403 20 44 RPL10L 140801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 47120456 47120456 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ATCTTCTGGCGTCCAGGGAAC 0.502 49 91 NEK9 91754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 75574067 75574067 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ACAGTGAAATCATCACCACAT 0.468 31 65 NEK9 91754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 75574125 75574125 + Silent SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CATGCTTTGGCTGTCGATAGG 0.453 13 34 AK7 122481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 96875258 96875258 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GACTTGGGCGCGCTCCAAAGC 0.473 14 32 AHNAK2 113146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 105415522 105415522 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GTCCACCTGGGGGCCCTTGAG 0.617 70 176 ZNF106 64397 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 42742995 42742995 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GATATTCTTTGGATCTTGCTT 0.398 69 171 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 48902974 48902974 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGCAAGTGCACATATTTGGCC 0.428 16 40 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85383197 85383197 + Silent SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GATTGAGCGGGGCTCAAGCGC 0.672 12 19 ST8SIA2 8128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 92973307 92973307 + Missense_Mutation SNP T T G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TACAATCAGATCAGCTGTGAA 0.388 23 38 KCNJ12 3768 hgsc.bcm.edu;broad.mit.edu 37 17 21319552 21319552 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGTCATCCTGGAAGGCATGGT 0.617 9 100 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29654857 29654857 + Splice_Site SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CCGAGTTTACGGTAGGTTTTT 0.378 11 46 CLTC 1213 hgsc.bcm.edu;broad.mit.edu 37 17 57746287 57746287 + Missense_Mutation SNP A A C TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGAGCGAGTCAAGAATTTTCT 0.373 5 84 GATA6 2627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 19751547 19751547 + Missense_Mutation SNP T T A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGAGGAGATGTACCAGACCCT 0.736 14 26 ATCAY 85300 hgsc.bcm.edu;broad.mit.edu 37 19 3907776 3907776 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CGGGGACAGCGCGGATCTATT 0.657 6 59 PRR12 57479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 50098329 50098329 + Missense_Mutation SNP A A G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ACTCAGTTCAACCTGCTGGCT 0.697 5 17 EPHA8 2046 hgsc.bcm.edu;ucsc.edu 37 1 22915717 22915717 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GAGAAACTCCGTCCCGCAGCG 0.667 15 31 SRRM1 10250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24977940 24977940 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ACGATCTTCCCCTGTCAGGAG 0.463 16 20 MAST2 23139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 46499563 46499563 + Missense_Mutation SNP G G C TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ACAAGGCCAAGATGGCCCGAA 0.572 14 23 NDC1 55706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 54266521 54266521 + Splice_Site SNP C C A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGGATGTCCACCTAGGAGGTC 0.403 23 42 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 181708361 181708361 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGTGGTGGTCGTTGGCGCATT 0.502 65 104 KCNT2 343450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 196197431 196197431 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TCACTGTTTGGAAGGTAGGCC 0.353 13 41 C20orf194 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 3236735 3236735 + Nonsense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CACTCCTGCTGCCCGCTGCTG 0.557 9 77 SCP2D1 140856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 18794627 18794627 + Silent SNP G G A rs143971555 TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTCACATCAGGGAAGTGGGAG 0.478 22 50 MCM3AP 8888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 47700424 47700424 + Silent SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTTTCTTCCTGTGCCAAAAGA 0.363 32 51 TMPRSS6 164656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 37462868 37462868 + Nonsense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGACTCACCTGACAGGCATCC 0.617 16 46 SBF1 6305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 50900448 50900448 + Missense_Mutation SNP A A T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTGTCCACAAAGCGGTTGATG 0.622 43 90 HEATR5B 54497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 37217840 37217840 + Missense_Mutation SNP T T C TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CATGCAGCCATTCTGTAATGA 0.388 12 67 NEK10 152110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 27352499 27352499 + Nonsense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GCAAGTTTTTGAAAAATATCT 0.468 20 62 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 178936095 178936095 + Missense_Mutation SNP A A C TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ATCACTGAGCAGGAGAAAGAT 0.363 12 29 EIF4G1 1981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 184043126 184043126 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ATCCCGCATCCGCTTTATGCT 0.527 40 76 MAEA 10296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 1316242 1316242 + Missense_Mutation SNP C C G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GAGACGGCCACCTGCCTGGCC 0.617 17 80 KDR 3791 hgsc.bcm.edu;broad.mit.edu 37 4 55976872 55976872 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GATTCTGACACGCTCCCCCAC 0.418 9 120 TRPC3 7222 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 122853813 122853813 + Missense_Mutation SNP G G T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGCTGGCCGCGAAGCCAGGGT 0.637 12 41 RBM46 166863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 155719190 155719190 + Nonsense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTATGAAATTCGACCAGGGAA 0.338 18 52 NPR3 4883 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 32712556 32712556 + Missense_Mutation SNP A A T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GAGGTCTTCCAGGAGGAGGGT 0.582 10 103 SLCO4C1 353189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 101583042 101583042 + Silent SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGGGCAGTTTCGCACAATGAG 0.353 59 105 MEGF10 84466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 126790302 126790302 + Splice_Site SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ATCCTTAAAAGGTATCATGTA 0.323 13 34 PCDHGA5 56110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140746124 140746124 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CTTTGTGGGCGTGGATGGGGT 0.632 57 87 PAK1IP1 55003 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 10707679 10707679 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGAAATTCCAGAGCATCATGT 0.328 40 153 GPRC6A 222545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 117130650 117130650 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GCTGCCATTGCCACTGTGACT 0.428 15 25 FAM135B 51059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 139149434 139149434 + Missense_Mutation SNP G G T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTCAATCCTGGCTGAATGAAA 0.388 41 65 TSNARE1 203062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 143427185 143427185 + Nonsense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CAGCGGTTCTGCAGCTTGCTC 0.597 18 40 FBP2 8789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 97355890 97355890 + Missense_Mutation SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TTTGATGGCCGTCAGCATTGA 0.632 16 23 SEC16A 9919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139354230 139354230 + Missense_Mutation SNP C C G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CCCATGGTAGCCATCGTCCTG 0.587 5 5 TBC1D25 4943 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 48418954 48418954 + Missense_Mutation SNP C C G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CTGCTCTCCTCCTTTTCCCAC 0.582 75 114 THOC2 57187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 122747329 122747329 + Nonsense_Mutation SNP G G C TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TGAAGATTTTGACTTATTTTT 0.323 36 69 GPC3 2719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 133087087 133087087 + Silent SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CTTGGAAAACCGCAGCATTCT 0.378 70 177 PPARG 5468 broad.mit.edu;ucsc.edu 37 3 12421382 12421382 + Missense_Mutation SNP C C G TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 AAGAACAGATCCAGTGGTTGC 0.398 29 87 ATP13A3 79572 broad.mit.edu;ucsc.edu 37 3 194181443 194181443 + Missense_Mutation SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ACACAGGTCGCTTTCACCCGC 0.448 31 57 SEMG2 6407 broad.mit.edu;ucsc.edu 37 20 43851148 43851148 + Missense_Mutation SNP G G A rs145586123 TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 CCGTCTTCACGTACAGAAGAA 0.398 30 61 FBN3 84467 broad.mit.edu;ucsc.edu 37 19 8152978 8152978 + Silent SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GCTCAAAGCCGTCAGCACAGG 0.617 29 54 FAM199X 139231 broad.mit.edu;ucsc.edu 37 X 103411604 103411604 + Silent SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TCAGCGACTTCGGCTGCCAGC 0.657 5 40 PKD1L2 114780 broad.mit.edu;ucsc.edu 37 16 81157276 81157276 + RNA SNP G G A TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 GGTCTCTAGCGTCAGCGTGAC 0.592 32 88 TRBV10-1 28585 broad.mit.edu;ucsc.edu 37 7 142231794 142231794 + RNA SNP C C T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 TCTGGTGACACGCCAAGGTCA 0.488 35 150 MMP20 9313 broad.mit.edu;ucsc.edu 37 11 102477309 102477309 + Missense_Mutation SNP C C T rs148818720 byFrequency TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 ATTGTCACAGCGTCAAAGGAT 0.577 4 34 OGT 8473 broad.mit.edu;ucsc.edu 37 X 70784541 70784541 + Missense_Mutation SNP G G T TCGA-DU-7006-01A-11D-2024-08 TCGA-DU-7006-10A-01D-2024-08 Untested Somatic Phase_I WXS none Illumina GAIIx 75d5d3ef-38e4-4cf0-af03-698bb4e86544 f1e2e051-e9aa-48e8-a1f8-4a041025d940 AGATGCCATCGTATACTGTAA 0.403 21 51