Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CAMK1D 57118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 12803041 12803041 + Missense_Mutation SNP G G A TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CTTGGACGCCGTGTACTATCT 0.577 13 23 MYO3A 53904 hgsc.bcm.edu;broad.mit.edu 37 10 26359114 26359114 + Silent SNP T T C TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d ACTTAGGATATCAATCTATGA 0.318 4 75 HPS1 3257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 100185433 100185433 + Missense_Mutation SNP A A C TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d TGGAGAAGCCATCCATCAGCT 0.692 15 25 CBX5 23468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 54635636 54635636 + Missense_Mutation SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d AATTTGTGGACATTTCACATT 0.398 45 72 MIPEP 4285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 24444199 24444199 + Missense_Mutation SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d ATGATATGATCCCCAGCAGAT 0.393 54 62 ZDHHC7 55625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 85010046 85010046 + Missense_Mutation SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d TGAGGGGGGCCCCCCAAAGAC 0.572 17 24 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7579362 7579362 + Missense_Mutation SNP A A C TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CCCAGACGGAAACCGTAGCTG 0.612 54 7 ACACA 31 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 35640173 35640173 + Missense_Mutation SNP T T C TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CTCACCTGCATTGGCTTTAAG 0.408 15 45 HNF1B 6928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 36059196 36059196 + Silent SNP G G A TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GCTTGTGTGCGTACACTGGAG 0.532 7 43 FPGT 8790 hgsc.bcm.edu;ucsc.edu 37 1 74670899 74670899 + Missense_Mutation SNP C C A TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d TAGTATCTTTCCAGATATACC 0.388 11 68 USP25 29761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 17246819 17246819 + Missense_Mutation SNP T T C TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d AGAATTGATATCACATTATAG 0.328 34 182 CYP26B1 56603 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 72359586 72359586 + Missense_Mutation SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GTCCGGACACCGCCACCGAAC 0.647 20 17 SCN1A 6323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 166872165 166872165 + Missense_Mutation SNP C C T rs146374754 TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GGTTCCACTACGGGCTGTTCT 0.413 54 87 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d ATAAGCATGACGACCTATGAT 0.393 24 38 LMCD1 29995 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 8590439 8590439 + Silent SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d AATATAAGAGCGAGGCCCTCG 0.587 34 70 FAM134B 54463 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 16475174 16475174 + Silent SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CTGCTGATTGCGTCTCTTTGC 0.493 38 52 CHDC2 286464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 36091355 36091355 + Missense_Mutation SNP C C A TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CAATTCCTTTCTCTTGAGGAA 0.433 30 64 HNRNPH2 3188 hgsc.bcm.edu;broad.mit.edu 37 X 100667035 100667035 + Missense_Mutation SNP G G T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GGCCTACCCTGGTCCTGCTCA 0.527 5 99 IGF2R 3482 broad.mit.edu;ucsc.edu 37 6 160501242 160501242 + Missense_Mutation SNP C C T TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GAGAGCAGGGCGAAGCTGTGG 0.557 44 50 GATA3 2625 broad.mit.edu;ucsc.edu 37 10 8100437 8100437 + Silent SNP G G A TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d CCCCGGCCTCGTCCTCCTCCT 0.716 33 39 HELZ 9931 broad.mit.edu;ucsc.edu 37 17 65105677 65105677 + Silent SNP A A G TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d GTGCGTGGGGAGCAGGAAGGG 0.473 43 42 PDK1 5163 broad.mit.edu;ucsc.edu 37 2 173423525 173423525 + Missense_Mutation SNP C C G TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d AGAAATAAGTCTCCTTCCAGA 0.393 30 42 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76939340 76939343 + Frame_Shift_Del DEL CTAC CTAC - TCGA-DU-6407-01A-13D-1705-08 TCGA-DU-6407-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx f92a34fa-014e-4b41-a6d0-3b46b8c8a3ee 4a5655ba-0f40-4c74-9534-23eb5df3ad4d TGCTCACTATCTACCTGTTTTCTT 0.358 132 277