Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count COL17A1 1308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 105793848 105793848 + Silent SNP A A G rs147001132 byFrequency TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGTCAGTGCCATAGGGACCCC 0.617 4 5 OR5AP2 338675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 56409492 56409492 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CTCCCAGACACGAGAACTGGG 0.488 13 37 PRCP 5547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 82571020 82571020 + Splice_Site SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGCACATACCGTGTTATTACA 0.353 10 34 ESAM 90952 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 124624651 124624651 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AAAGACCCACGGATGACATCT 0.478 36 68 TUBGCP5 114791 hgsc.bcm.edu;broad.mit.edu 37 15 22835954 22835954 + Missense_Mutation SNP A A G TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CACAAAATAGAAAAAACAATC 0.313 57 98 DUOX2 50506 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 45401122 45401122 + Silent SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AGTCTGTACGGGAGAATTTGC 0.557 14 46 MYH11 4629 hgsc.bcm.edu;broad.mit.edu 37 16 15839063 15839063 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ACCTTCATGGCGGTCAGCTGC 0.617 24 43 DVL2 1856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7130442 7130442 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TCTCCGAAGACGTAATAGCAC 0.587 37 72 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 12620681 12620681 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTCCCTGAAGCGCAAAGCCAG 0.398 6 15 ATP8B3 148229 hgsc.bcm.edu;broad.mit.edu 37 19 1785228 1785228 + Silent SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TCATGATGGCGTAGAAACCAA 0.597 5 8 WDR63 126820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 85546977 85546977 + Missense_Mutation SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTTAACTGCCGAATAGATGAA 0.368 42 72 SPAG17 200162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 118558706 118558706 + Missense_Mutation SNP A A C TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CCAGGTGCCTATGTGAACCTC 0.468 26 54 FLG 2312 hgsc.bcm.edu;broad.mit.edu 37 1 152279767 152279767 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ATGGTGACGCGACCCTGAGTG 0.597 113 238 OR6K3 391114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 158687191 158687191 + Missense_Mutation SNP T T G TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CCTGCACAGGTAGAAAAAGCC 0.453 26 33 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 176863937 176863937 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TCTCTTTCCCGCTCCTCAGAC 0.532 60 105 AGBL5 60509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 27278054 27278054 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CCAAACCCTCCGTCGCCTCTT 0.557 42 79 PSD4 23550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 113950108 113950108 + Missense_Mutation SNP C C T rs117870995 by1000genomes TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CTTGGCCTCACGCCTCTATCG 0.597 23 50 PDE11A 50940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 178936632 178936632 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ATTCACTCTCGATTCCAGCAG 0.537 37 66 COL6A3 1293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 238277603 238277603 + Silent SNP G G A rs115551245 by1000genomes TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GCCGTATGGCGTCCAGCACCG 0.557 17 24 ROBO2 6092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 77614192 77614192 + Silent SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CCAATACAATCTACTTATTCA 0.507 15 44 SI 6476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 164730794 164730794 + Missense_Mutation SNP T T C TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TCCGTTAGAGTTTTATCTATT 0.328 25 77 SENP5 205564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 196654715 196654715 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AAATAGACCTGAATTTCTTCA 0.413 26 27 TLR6 10333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 38830190 38830190 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTTCAATGTCGTTTTAGAATA 0.323 11 25 SNCA 6622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 90743488 90743488 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGTCACACCCGTCACCACTGC 0.502 15 25 NDST3 9348 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 119064828 119064828 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CTTCACTGTCGTCCTCAACCC 0.428 15 36 PRSS12 8492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 119216148 119216148 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GAGCGTAGCCCCGCAGAGGAG 0.532 12 17 RAPGEF6 51735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 130766884 130766884 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GTTTGGAAGGCTTTGGAAGTT 0.443 22 67 PCDHGB4 8641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140769049 140769049 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CTGCAGGCCCGCGACCAGGGC 0.677 23 19 GRIA1 2890 hgsc.bcm.edu;ucsc.edu 37 5 153174271 153174271 + Silent SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AGGGCGAGTGCGGCAGCGGGG 0.458 10 28 FAM71B 153745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 156589604 156589604 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ACGATATCTACCTCTCTGTCA 0.483 61 156 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 51889804 51889804 + Missense_Mutation SNP T T G TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GACGTGGTGTTCTGTCCTCTC 0.498 28 70 CHN2 1124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 29535576 29535576 + Silent SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AGGTCCACACGTTCCGAGGCC 0.483 29 51 HECW1 23072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 43581598 43581598 + Splice_Site SNP G G C TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTTTGGACAGGTTTGTGTGAC 0.368 27 148 WBSCR17 64409 hgsc.bcm.edu;broad.mit.edu 37 7 70597851 70597851 + Silent SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TAGCCGGCTTCGTGCTCTTCC 0.672 3 20 HGF 3082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 81339500 81339500 + Nonsense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ATGTTTGTTCGTGTTGGAATC 0.348 19 86 EPHB6 2051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142563850 142563850 + Missense_Mutation SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGTGAAGGCCGCCAGGAACCT 0.637 7 8 OR2A5 393046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 143747664 143747664 + Missense_Mutation SNP C C A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CTGCACACCCCCATGTACTTC 0.502 42 79 ABCF2 10061 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 150921894 150921894 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GCCATAACGACGGCCTGAGTT 0.463 14 43 GRHL2 79977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 102585973 102585973 + Missense_Mutation SNP A A G TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 ACCTACCTCAACAAAGGACAG 0.522 16 28 TSC1 7248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 135798758 135798758 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GCACCATGATGACAGACGGCC 0.433 17 38 PHKA2 5256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 18912471 18912471 + Missense_Mutation SNP G G C TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGCGGCACGCGGTTCAGCACC 0.602 20 43 CYBB 1536 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 37660587 37660587 + Missense_Mutation SNP G G C TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TCAACAGAAGGTGGTCATCAC 0.418 95 168 BCOR 54880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 39933842 39933842 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGGGGACCGACGTAGTGAGGT 0.612 7 20 BCOR 54880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 39933843 39933843 + Nonsense_Mutation SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GGGGACCGACGTAGTGAGGTG 0.607 7 20 PCDH19 57526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 99662058 99662058 + Missense_Mutation SNP C C A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GTAGATGTCGCCTGAGTTGGG 0.587 39 66 SLC25A53 401612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 103349186 103349186 + Missense_Mutation SNP C C A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GGCAGAGGCCCACAGGCTTGG 0.532 16 32 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 148069037 148069037 + Missense_Mutation SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 AATGTGTTACGGGGCTATGAA 0.483 40 103 L1CAM 3897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 153133300 153133300 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CAGGACACGCGCACCTGGCTC 0.667 26 67 SLC35F3 148641 broad.mit.edu;ucsc.edu 37 1 234041399 234041399 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GTCGCGCTCCGTGGAGGATCT 0.642 25 41 MT1HL1 645745 broad.mit.edu;ucsc.edu 37 1 237167625 237167625 + Silent SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGCAGGAGCCGGCGCAGGCGT 0.627 8 19 MIR548I2 100302277 broad.mit.edu;ucsc.edu 37 4 9557805 9557805 + RNA SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GGATCAGGGACGAACTTTGTT 0.383 58 126 HRNR 388697 broad.mit.edu;ucsc.edu 37 1 152192866 152192866 + Silent SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TGTGTTGGCCGCGGCCTGAAG 0.632 6 20 TFDP3 51270 broad.mit.edu;ucsc.edu 37 X 132351926 132351926 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 CCTCTGCACCGTCTCCCAGAC 0.592 36 85 LBH 81606 broad.mit.edu;ucsc.edu 37 2 30457270 30457270 + Splice_Site SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTTCTTGGCAGCCCCGACTAT 0.542 22 43 PCLO 27445 broad.mit.edu;ucsc.edu 37 7 82785657 82785657 + Silent SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GCCCAGGGTCCGGGGGTCTTC 0.418 15 37 MPPED1 758 broad.mit.edu;ucsc.edu 37 22 43870690 43870690 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GTTCATGGCCGACCTCATCAA 0.542 33 83 DLGAP5 9787 broad.mit.edu;ucsc.edu 37 14 55619340 55619340 + Missense_Mutation SNP G G T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GGTAATCCAGGACACTGAGCA 0.323 4 17 CXXC11 285093 broad.mit.edu;ucsc.edu 37 2 242814228 242814228 + Missense_Mutation SNP C C T TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTCCCCGCCACGGCCTGGGGT 0.677 6 6 CYP4F3 4051 broad.mit.edu;ucsc.edu 37 19 15770103 15770103 + Missense_Mutation SNP G G A TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 GCGCTTCCGCGTCCTGCCTGA 0.672 8 19 PSME4 23198 broad.mit.edu;hgsc.bcm.edu 37 2 54123990 54123990 + Frame_Shift_Del DEL T T - TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTTTTAGCTGTTTAAGGATAC 0.348 74 172 TEX33 339669 broad.mit.edu;hgsc.bcm.edu 37 22 37387528 37387528 + Frame_Shift_Del DEL C C - TCGA-DU-6403-01A-11D-1705-08 TCGA-DU-6403-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx 5d48a626-5f15-4f2d-8ca9-947b7d39146a 1ae82b76-b781-4d6e-a0da-ba341056fe11 TTACCCAGATCATCCGTCTTC 0.542 38 85