Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ANO9 338440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 418583 418583 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ATGCACAAGGCCACGTGCTAG 0.627 23 39 RB1 5925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 48953728 48953728 + Splice_Site SNP A A G TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GTTTGTTTGTAGCGATACAAA 0.333 10 8 GMPR2 51292 hgsc.bcm.edu;broad.mit.edu 37 14 24707610 24707610 + Missense_Mutation SNP A A T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GGCTGAGTACAGGTATGTGTG 0.512 3 44 MAGEL2 54551 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 23889301 23889301 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 AACCTCAGGACAAGCATCTTG 0.522 20 37 IST1 9798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 71958718 71958718 + Missense_Mutation SNP T T C TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GCACAGATTGTTGGTGAGTAG 0.418 23 10 NF1 4763 hgsc.bcm.edu;broad.mit.edu 37 17 29497016 29497016 + Splice_Site SNP G G A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CTCCTGAAGGGTAAGTTTAAA 0.289 14 35 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29677227 29677227 + Nonsense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 TGAAGAAGTTCGAAGTCGCTG 0.363 41 80 SLC16A5 9121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 73096729 73096729 + Missense_Mutation SNP C C G TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GTGTGTGCGGCATCAGGTGAC 0.617 291 546 DSG2 1829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 29099849 29099849 + Silent SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 TCACCGCCCCCGTGGCTCTTC 0.443 33 46 CCDC159 126075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 11462650 11462650 + Splice_Site SNP G G A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CAGAAGCTCCGTGAGTTCCTG 0.612 8 14 ZNF429 353088 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 21720518 21720518 + Missense_Mutation SNP C C A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ACTTACTCAACATAAGAAAAT 0.353 14 45 SPTBN4 57731 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40998962 40998962 + Splice_Site SNP G G A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 AGACAGCTGGGTAAGCACCCC 0.522 6 18 FLG 2312 hgsc.bcm.edu;broad.mit.edu 37 1 152278733 152278733 + Missense_Mutation SNP G G T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CCCTCTGATTGTCCCTGGACT 0.577 101 402 CRNN 49860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 152382287 152382287 + Missense_Mutation SNP C C T rs150002541 by1000genomes TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 TGTCACACAGCGCCTTGGGTG 0.602 17 40 C4BPB 725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 207265091 207265091 + Missense_Mutation SNP T T A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GACCACTACATCCTCAAGGGC 0.493 8 59 OBSCN 84033 hgsc.bcm.edu;ucsc.edu 37 1 228486408 228486408 + Silent SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CGGCCACGCTCACTGTCAGGG 0.547 24 33 UCKL1 54963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 62577859 62577859 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CCAGGGCGGCCGCCCGGCGGT 0.677 17 15 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21226162 21226162 + Silent SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ATTCCCGGACCCTCAACTCAG 0.393 114 268 MFSD6 54842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 191301884 191301884 + Missense_Mutation SNP G G A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CGTCTTCGGCGTTCTCATGAC 0.512 19 31 SLC25A38 54977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 39431997 39431997 + Splice_Site SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GGGATGTCCCCTGTAAGCTGC 0.478 13 58 KDR 3791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 55956204 55956204 + Silent SNP C C T rs147630437 TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CGTTCTTCTCCGATAAGAGGA 0.428 27 53 SEC31A 22872 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 83763471 83763471 + Missense_Mutation SNP G G C TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 AAGAGGCCTGGTGCTGTGCTG 0.552 10 16 RXFP1 59350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 159526262 159526262 + Silent SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CTCCTGATTGCTTCAAGAATT 0.299 11 30 ZFP42 132625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 188924355 188924355 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GAAAGAGCTTCCACAAAAGAT 0.418 46 80 PCDHB13 56123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140594885 140594885 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CTGAAATCCGCGGAAAACTTT 0.453 25 56 GRM6 2916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 178418950 178418950 + Missense_Mutation SNP C C A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ACACATAGTTCCATCCCAGTG 0.622 10 24 GRM6 2916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 178418951 178418951 + Nonsense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CACATAGTTCCATCCCAGTGC 0.627 10 23 HIVEP1 3096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 12122495 12122495 + Missense_Mutation SNP G G C TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ATCAAAGCAAGTGTTTCTTCT 0.403 80 36 PTCHD4 442213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 47846810 47846810 + Missense_Mutation SNP A A C TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 AGATGATATCATTTCGAAAAT 0.423 44 13 PRDM13 59336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100062566 100062566 + Missense_Mutation SNP C C G TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ACGACAGTGACGTGGACGTCT 0.701 24 15 COG5 10466 hgsc.bcm.edu;broad.mit.edu 37 7 107167729 107167729 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 TCTACTTCCCCCTTGCAGTTG 0.338 17 15 CXorf22 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 35985795 35985795 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CTTGGCAAAACGCAAGAATTA 0.393 18 54 APEX2 27301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 55033526 55033526 + Missense_Mutation SNP A A T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GCTGTCCCCAAGCCTCTCCTG 0.587 9 18 OPHN1 4983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 67283790 67283790 + Silent SNP G G T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GTCCATTGGTGGCCTTTGGGG 0.607 15 27 ACSL4 2182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 108921235 108921235 + Silent SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 AGAGTGTAAGCGGAGAAGAAT 0.428 57 88 DCAF12L1 139170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 125685930 125685930 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CGGGTCCATCCGCCACAGCGC 0.657 17 32 CXorf40B 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 149100914 149100914 + Missense_Mutation SNP T T A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GCAGCTTGATTTTCTAGTTCC 0.473 39 70 MYO5A 4644 broad.mit.edu;ucsc.edu 37 15 52622645 52622645 + Missense_Mutation SNP C C T TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 GTTGACTGGTCGGATGGGTTC 0.418 58 99 NCKAP1L 3071 broad.mit.edu;ucsc.edu 37 12 54902315 54902315 + Splice_Site SNP G G A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 CATGGGCATGGGTGAGTTAAG 0.423 68 141 OR3A2 4995 broad.mit.edu;ucsc.edu 37 17 3181629 3181629 + Missense_Mutation SNP T T A TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 TTGAGTTGGGTGCTGGAGCAG 0.552 28 62 PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89720803 89720804 + Frame_Shift_Ins INS - - A rs146650273 TCGA-DU-5847-01A-11D-1705-08 TCGA-DU-5847-10A-01D-1705-08 Untested Somatic Phase_I WXS none Illumina GAIIx c5a5c729-4bff-4787-a56b-f541ec22c7e9 c448c220-5f1b-423f-8d89-098662d2fed1 ATCTAGTACTTACTTTAACAAA 0.327 57 24