Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
YME1L1	10730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	27420861	27420861	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	TGTTGTTGTCCGGAAGCGGAC	0.373	20	47
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	18339305	18339305	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CACCTTTAGACGACTGGAGTC	0.463	8	12
PLEKHG6	55200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	6422805	6422805	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	GATCCCAGTCGCCGACGCCTC	0.637	44	91
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	55735794	55735794	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	TATGGCATCACGCCAGAGAAC	0.622	40	101
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	16321163	16321163	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CCTCAACTACCGAAAGGGAAC	0.597	14	45
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	73832286	73832286	+	Missense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CTCACCTGCACCATGGGTTGA	0.667	5	29
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17752214	17752214	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CATGGCTTGGTAGATGGACTC	0.592	24	45
KIR2DL1	3802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55285048	55285048	+	Missense_Mutation	SNP	T	T	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CTATCAGGTGTCAGCTCCCAG	0.522	95	126
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu	37	20	30432674	30432674	+	Silent	SNP	G	G	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CAGCCTCTGAGAAGCCGGCAG	0.587	6	91
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	44578967	44578967	+	Missense_Mutation	SNP	G	G	C			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CATCAGGACTGTGCAGCCGCT	0.582	55	82
SYNJ1	8867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	34038343	34038343	+	Silent	SNP	G	G	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	GGCTACAGACGAAGCAAAGGC	0.423	11	22
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	ATAAGCATGACGACCTATGAT	0.393	22	34
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52840399	52840399	+	Missense_Mutation	SNP	G	G	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	ACAGTGCTGCGCCTTATTCAG	0.612	13	44
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	138713162	138713162	+	Missense_Mutation	SNP	A	A	G			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	CAGCACAATCAGAATCTGATC	0.527	23	28
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	157495231	157495231	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	AGGCACTCCACAGCCCGAGAG	0.522	9	64
COL15A1	1306	broad.mit.edu;ucsc.edu	37	9	101832036	101832036	+	Silent	SNP	G	G	A			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	GGCGAACCGCGGACACAGCGG	0.537	68	123
ASCC1	51008	broad.mit.edu;hgsc.bcm.edu	37	10	73970535	73970535	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	GAATCCTTGTGGGGTCTGCTC	0.527	18	45
CIC	23152	broad.mit.edu	37	19	42792001	42792001	+	Missense_Mutation	SNP	T	T	C			TCGA-DH-A66F-01A-11D-A29Q-08	TCGA-DH-A66F-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	56c484b6-1c09-4042-aee7-e4daa419fafe	15eb007e-8c8c-473a-b55e-cfa4b7786432	AGATTGGAAGTGGTGCAACAA	0.632	6	4