Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 16883005 16883005 + Silent SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AACCACAAAACGTTCCAGCCA 0.363 17 110 MYO3A 53904 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 26243813 26243813 + Missense_Mutation SNP A A G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GATATTGACGAAGAGATTGAA 0.318 21 287 PSD 5662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 104173754 104173754 + Missense_Mutation SNP A A C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AGGCAGCTCAAAGGTGAAGAA 0.652 11 117 GAS2 2620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 22747932 22747932 + Missense_Mutation SNP G G A TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TCCTGGTGCCGAGATTTAGGG 0.398 15 150 OR1S1 219959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 57982589 57982589 + Missense_Mutation SNP A A T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CGTCATTGACAATTTGCTCTT 0.453 176 262 OAF 220323 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 120097624 120097624 + Missense_Mutation SNP C C G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CCTGCTGAGCCCCCATCTCCA 0.642 54 78 LST3 338821 hgsc.bcm.edu;ucsc.edu 37 12 21205042 21205042 + Silent SNP A A C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 ATAGTCCAGTAAGATCTCATG 0.388 25 127 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 43925953 43925953 + Missense_Mutation SNP T T C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GCCTTCATTATAGGTTCTAAG 0.343 13 154 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578271 7578271 + Missense_Mutation SNP T T C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TCGGATAAGATGCTGAGGAGG 0.562 75 13 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 10309482 10309482 + Missense_Mutation SNP C C G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AGAAGTCCAGCTTTGAAGAAA 0.403 50 82 UNC45B 146862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 33482401 33482401 + Silent SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TGGCTGTCTGCAACCTGCTCC 0.552 25 211 GAS2L2 246176 hgsc.bcm.edu;broad.mit.edu 37 17 34072135 34072135 + Missense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CCTGGGGATTCGTGAAGGCTG 0.632 18 285 AMY2B 280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 104115689 104115689 + Missense_Mutation SNP G G A TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TTCTAGGTTCGTATTTATGTG 0.368 148 856 MUC1 4582 hgsc.bcm.edu;broad.mit.edu 37 1 155160204 155160204 + Missense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TCACCGCTGACGTCTGAGATC 0.577 7 78 AIM2 9447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 159035847 159035847 + Silent SNP G G A rs148686373 TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CACGTGAGGCGCTATTTACCT 0.368 34 343 SIRPD 128646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 1517834 1517834 + Missense_Mutation SNP G G T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CAGCAGCAGGGTTGGACGAAA 0.607 44 160 RTDR1 27156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 23401832 23401832 + Missense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GCGCTATGGTCATGGGGGAGT 0.657 66 221 PTPN18 26469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 131116491 131116491 + Missense_Mutation SNP G G A rs11892325 byFrequency TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GTGCTCCACCGTGGCCGGCAG 0.627 62 145 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu 37 2 141528521 141528521 + Missense_Mutation SNP G G T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AGTTTCAGATGTTGGTAAACA 0.353 13 228 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 152342397 152342397 + Silent SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CCTTGAAGGACACCTCATCTG 0.458 67 134 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 ATAAGCATGACGACCTATGAT 0.393 41 72 C2orf62 0 hgsc.bcm.edu;broad.mit.edu 37 2 219232561 219232561 + Silent SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TGGTCACCTTCGCCGCCGAGT 0.701 6 67 CCDC158 339965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 77244544 77244544 + Missense_Mutation SNP A A G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TGTTGTTTCTATTGGCGGAGA 0.353 35 389 CCNG2 901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 78081991 78081991 + Nonsense_Mutation SNP A A T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TAGTCAGTGTAAATGTACTGC 0.363 92 155 ZNF713 349075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 56006946 56006946 + Silent SNP A A C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 ATCTGAACTCAAACCTTATGC 0.368 36 146 OR13C2 392376 hgsc.bcm.edu;broad.mit.edu 37 9 107367614 107367614 + Missense_Mutation SNP C C A TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AACATCTGCACTGCACAGCCA 0.522 26 273 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 131337005 131337005 + Nonsense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GGAGAAGATGCGAGAAAAAGG 0.468 53 98 CACNA1B 774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 140850187 140850187 + Missense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 GGAGAACCGCCGCGCCTTCCT 0.642 10 27 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76890086 76890086 + Splice_Site SNP T T C TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AGCTCTTACCTGTAAAGTCTT 0.393 85 29 DNAH11 8701 broad.mit.edu;ucsc.edu 37 7 21678576 21678576 + Missense_Mutation SNP G G T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TTGTGAAAAAGCTCTCGCTGA 0.403 70 166 TRPM6 140803 broad.mit.edu;ucsc.edu 37 9 77435280 77435280 + Silent SNP A A G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 ACTGTTTAAGACTAAAGTTGA 0.413 38 113 RHAG 6005 broad.mit.edu;ucsc.edu 37 6 49604490 49604490 + Silent SNP C C A TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TGGCAATTTCCAGGACTATAG 0.443 59 144 SNX17 9784 broad.mit.edu;ucsc.edu 37 2 27599364 27599364 + Missense_Mutation SNP C C T TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 TGATGCCACCCGGGAGTCTAT 0.572 80 276 SMCO4 56935 broad.mit.edu;ucsc.edu 37 11 93212240 93212240 + Missense_Mutation SNP G G A TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 CACGACCACGGCCAGCGTGGG 0.652 10 95 RMI1 80010 broad.mit.edu;ucsc.edu 37 9 86616940 86616940 + Missense_Mutation SNP C C G TCGA-DH-5142-01A-01D-1468-08 TCGA-DH-5142-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3a80ae1c-948a-4a98-b0c2-f81ab2415083 25f1462b-2671-4f5d-85e0-9539594b53e4 AAATGCCGATCGAAGTATAGA 0.343 16 103