Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count INTS4 92105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 77639508 77639508 + Silent SNP A A T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TGAACATGTCAACTAGGAAAT 0.443 47 24 MAML2 84441 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 95712904 95712904 + Missense_Mutation SNP C C G TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TTGGGTTTCTCTGTTGGGTCA 0.408 114 97 ATN1 1822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 7046127 7046127 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CCCAATGGCCCTCCAGTCTCT 0.637 17 216 SPTBN5 51332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 42172441 42172441 + Silent SNP A A G TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TCCAGCCACAACTGGAGCTCC 0.632 8 18 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89398499 89398499 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 AAGTGGACTGCCCTCTGGAGA 0.572 40 58 SLX4 84464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 3640690 3640690 + Silent SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 AGAGCTGTTCGTAATCCCCGG 0.572 130 123 ABCC12 94160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 48174762 48174762 + Silent SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GCTATGCACAGTCCAATGCCA 0.537 79 105 TP53 7157 hgsc.bcm.edu;broad.mit.edu 37 17 7574035 7574035 + Splice_Site SNP T T G TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CCCACGGATCTGCAGCAACAG 0.507 15 33 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577572 7577572 + Missense_Mutation SNP T T C TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CTGTTACACATGTAGTTGTAG 0.572 45 77 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 29556166 29556166 + Missense_Mutation SNP T T C TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TGGCTTCCTTTGTGCCCTTGG 0.512 101 12 CCDC40 55036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 78032380 78032380 + Missense_Mutation SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GACGACATCCGCGTGATGACA 0.537 120 12 PLIN4 729359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 4511095 4511095 + Silent SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CATCCTTAGCGCCACTCAGCA 0.592 34 83 NOTCH3 4854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 15281250 15281250 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GCTGTGCTCGCGCTTGCGCCG 0.677 45 65 SLC7A9 11136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 33350866 33350866 + Missense_Mutation SNP G G T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GCCAAAGGCAGGTTTCTGGGA 0.602 21 80 LPHN2 23266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 82456736 82456736 + Silent SNP T T C TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 gcaggggcaatagtgatggtt 0.428 48 69 RFWD2 64326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 176132075 176132075 + Missense_Mutation SNP T T C TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 ATCAAGGTTATCTTGGTCAGT 0.358 85 99 RBM11 54033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 15599378 15599378 + Missense_Mutation SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TCAGATGACAGCTCCACTTCC 0.463 100 373 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 21228172 21228172 + Silent SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GCTCAGGCACGATGATGGTGG 0.473 110 131 ACOXL 55289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 111562956 111562956 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GCTTTCCAAGCTATGGGTGCC 0.453 76 121 NDUFAF3 25915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 49059582 49059582 + Missense_Mutation SNP C C G TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TCAGCCATGGCCACCGCTCTC 0.716 13 22 UBXN7 26043 hgsc.bcm.edu;broad.mit.edu 37 3 196094958 196094958 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CCATGTTCACCCAGAAATCCC 0.398 20 243 HIST1H4G 8369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 26247163 26247163 + Missense_Mutation SNP C C T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 CACTTGGCACCGCCTTTCCCA 0.517 20 105 HLA-DQA2 3118 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32713607 32713607 + Missense_Mutation SNP C C T rs144060347 TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TTTCCTGTGACGCTGGGTCAG 0.507 130 127 SLC25A40 55972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87466058 87466058 + Silent SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 AAAATAATCCGGAAAATCCAT 0.259 28 72 CPA1 1357 hgsc.bcm.edu;broad.mit.edu 37 7 130024455 130024455 + Missense_Mutation SNP G G A TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 GAACTGGGACGCTGGCTTTGG 0.602 12 151 ZCRB1 85437 broad.mit.edu;ucsc.edu 37 12 42711595 42711595 + Missense_Mutation SNP G G T TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TTACCTGTTTGTTGTTTATTG 0.393 90 137 UGGT1 56886 broad.mit.edu;hgsc.bcm.edu 37 2 128938471 128938471 + Frame_Shift_Del DEL T T - TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 TAGGAGTTTATACCTTACATG 0.373 54 73 TP63 8626 broad.mit.edu;hgsc.bcm.edu 37 3 189612149 189612149 + Frame_Shift_Del DEL G G - TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 AGTGAGACCCGGGGTGAGCGT 0.567 107 155 TP53 7157 broad.mit.edu;hgsc.bcm.edu 37 17 7574025 7574025 + Frame_Shift_Del DEL C C - TCGA-DH-5140-01A-01D-1468-08 TCGA-DH-5140-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 4472483c-47e2-47f0-b02f-6a8cb4c7bd96 310c380c-c166-4480-ae74-62a9ff686291 AGCGCTCACGCCCACGGATCT 0.522 19 38