Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count NUDT13 25961 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 74879835 74879835 + Missense_Mutation SNP C C T rs145352986 byFrequency TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CAAACAGGAGCGTTTTACCTC 0.448 26 121 SERPINH1 871 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 75282973 75282973 + Nonsense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CCCCTTTGACCAGGACATCTA 0.617 22 65 SLCO1B1 10599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 21327629 21327629 + Missense_Mutation SNP T T A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CTTTGCCACATTTCTTCATGG 0.323 24 38 STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 104033987 104033987 + Silent SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CAGATAACCCGTGTCATAGGA 0.463 34 86 FBXW8 26259 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 117448196 117448196 + Silent SNP G G A rs146667375 byFrequency TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GTGACTTCACGTGTGTCAACC 0.572 15 160 MCTP2 55784 hgsc.bcm.edu;broad.mit.edu 37 15 94927307 94927307 + Missense_Mutation SNP A A G TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TCAGACGCATACCGTCTACAA 0.433 5 54 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578190 7578190 + Missense_Mutation SNP T T C rs121912666 TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a AGGCGGCTCATAGGGCACCAC 0.557 33 5 ACSBG2 81616 hgsc.bcm.edu;broad.mit.edu 37 19 6187326 6187326 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TGAAAATGTGCCCCCCATTCC 0.483 15 180 MEGF8 1954 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 42873066 42873066 + Missense_Mutation SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GTGTGCAAACGGGCACCACGA 0.622 53 63 NLRP12 91662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 54314482 54314482 + Missense_Mutation SNP T T A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TAGGCGCGCATTGCGGTCTTC 0.567 50 164 MARC2 54996 hgsc.bcm.edu;broad.mit.edu 37 1 220955136 220955136 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CCTGTGTGATCCTTCTGAGAG 0.393 7 107 SLC52A3 113278 hgsc.bcm.edu;broad.mit.edu 37 20 744513 744513 + Silent SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a ACGCCACGAGGCAGCAGGCCA 0.612 6 89 ABCG8 64241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 44099378 44099378 + Missense_Mutation SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GACCCCACTAGACACCAACTG 0.582 13 62 LONRF2 164832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 100915722 100915722 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TCAGTTACATCAAGCGAGAGC 0.418 6 43 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TAAGCATGACGACCTATGATG 0.398 27 42 SLC6A3 6531 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 1416304 1416304 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TGGGTGGCCGCGTCAATCCAA 0.627 11 72 KLHL3 26249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 136993906 136993906 + Missense_Mutation SNP T T C TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TGGTATTTCATGGCCTCAATG 0.473 44 72 PCDHB3 56132 hgsc.bcm.edu;broad.mit.edu 37 5 140480514 140480514 + Missense_Mutation SNP A A G TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GACCGGGAGGAGCTATGCGGC 0.463 11 165 DEK 7913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 18236804 18236804 + Missense_Mutation SNP T T G TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TAAAGGTTCATCATCTGAACT 0.294 8 67 BCLAF1 9774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 136588241 136588241 + Missense_Mutation SNP T T G TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TGAAAAGTAGTATTTGAGTTG 0.393 10 87 TTLL2 83887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 167752140 167752140 + Missense_Mutation SNP T T C TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CACAGATCTTTGAGAACCACC 0.488 31 53 WBSCR17 64409 hgsc.bcm.edu;broad.mit.edu 37 7 70800596 70800596 + Missense_Mutation SNP C C T rs140476927 TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GGGGGCCTTCCGGCTACTCTT 0.463 7 92 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu 37 8 139768055 139768055 + Silent SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CAGGTGGCCCCGCAGGTCCCA 0.547 11 169 KANK1 23189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 713193 713193 + Silent SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a AATCTCTGGAGAACCCCCAGC 0.572 17 180 SNAPC4 6621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 139291430 139291430 + Splice_Site SNP G G A TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a AACAGTTACCGAGATCGGGGG 0.567 52 122 USP9X 8239 hgsc.bcm.edu;broad.mit.edu 37 X 41084138 41084138 + Missense_Mutation SNP A A G TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TTCAGAGGAAACCGTCAAATT 0.383 5 55 ATRX 546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 76940500 76940500 + Splice_Site SNP T T C TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a AAAGCAATTCTATTAAAAGAA 0.294 6 35 ATP2B3 492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 152813393 152813393 + Silent SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CCAACGCACCCAAAAAGGAGA 0.592 18 91 CPA1 1357 broad.mit.edu;ucsc.edu 37 7 130023308 130023308 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a GTCACCCAGGCCAGTGGGGTC 0.642 19 51 USP44 84101 broad.mit.edu;ucsc.edu 37 12 95926723 95926723 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CTCTAATTCACGTTGTATTTT 0.393 11 77 ATRX 546 broad.mit.edu 37 X 76937770 76937770 + Frame_Shift_Del DEL T T - TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TGAAGGTTTCTTTTTTTCTTC 0.343 11 74 ATRX 546 broad.mit.edu 37 X 76814303 76814306 + Frame_Shift_Del DEL ATAA ATAA - TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a AGTAGAAATGATAAATAATCGTCC 0.289 8 12 ATRX 546 broad.mit.edu 37 X 76909677 76909680 + Frame_Shift_Del DEL CTTT CTTT - TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a TCCAACTCTGCTTTCTTTGCAGAC 0.319 8 48 TP53 7157 broad.mit.edu 37 17 7578508 7578508 + Missense_Mutation SNP C C T TCGA-DB-A4XD-01A-11D-A27K-08 TCGA-DB-A4XD-10A-01D-A27N-08 Untested Somatic Phase_I WXS none Illumina GAIIx a9d4f9d8-787d-41b0-8f45-e9858ef6b281 0df99eaa-b248-47fe-a233-e9ed0f34d70a CTGCACAGGGCAGGTCTTGGC 0.572 5 78