Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count HKDC1 80201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 71010063 71010063 + Missense_Mutation SNP G G A rs148336562 by1000genomes TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 AAAGTTTCTCGCCCTGGATCT 0.547 20 203 OR8J3 81168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 55904857 55904857 + Missense_Mutation SNP A A G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 AGCCAGCATCATTACCTCCGA 0.478 12 91 FTH1 2495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 61732945 61732945 + Missense_Mutation SNP C C G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 AAGTATTTGGCAAAGTTCTTC 0.458 31 29 PTPRCAP 5790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 67203469 67203469 + Missense_Mutation SNP G G A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GCCACCATCCGCGACGTGGTC 0.657 13 47 NOS1 4842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 117768538 117768538 + Missense_Mutation SNP C C T TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GTCCCATCACCTGTAAAGGTG 0.632 15 28 FERMT2 10979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 53385874 53385874 + Missense_Mutation SNP A A G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 ACAGCTTTGAAGACTCTATCA 0.393 26 37 CATSPERB 79820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 92076966 92076966 + Missense_Mutation SNP G G A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CACCATTGTCGTAACAAAGCA 0.373 8 25 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89382124 89382124 + Missense_Mutation SNP C C G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CAGTGCCTATCAGGACAAGGT 0.617 34 117 ACAN 176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 89382142 89382142 + Missense_Mutation SNP C C A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GGTCTCACTGCCCAACTACCC 0.612 39 119 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577538 7577538 + Missense_Mutation SNP C C T rs11540652 TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GATGGGCCTCCGGTTCATGCC 0.572 52 8 ALPK2 115701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 56203630 56203630 + Silent SNP G G A rs76266246 byFrequency TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TGAGACCACCGTCTGATGCCT 0.498 57 77 CPXM1 56265 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 2775986 2775986 + Silent SNP G G A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 ATTCATTCTCGTGAGGGAACT 0.567 19 21 HADHA 3030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 26437420 26437420 + Silent SNP C C T TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TCATGGCATACGCTGTCAATT 0.338 5 10 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 ATAAGCATGACGACCTATGAT 0.393 9 21 SLC19A3 80704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 228563995 228563995 + Missense_Mutation SNP C C T rs147502239 byFrequency TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GCCAGCGTGACGCTCCTGCAG 0.592 69 103 SCLY 51540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 239002577 239002577 + Missense_Mutation SNP A A G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CCTGGAAGAGAGGCTGGAAGT 0.672 11 10 CNTN4 152330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 2924865 2924865 + Missense_Mutation SNP A A G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 ATAGAAGTGCAGTTCCCAGAA 0.408 18 22 LIFR 3977 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 38523540 38523540 + Missense_Mutation SNP C C G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GAGCTCCATACTCTCTTTACG 0.343 17 36 RAB23 51715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 57058690 57058690 + Missense_Mutation SNP T T A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 AGCTATTTGTTGTTTGAGTTT 0.318 9 6 PLG 5340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 161173247 161173247 + Silent SNP C C T TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TCCAATCCACCGAACTCTGTG 0.488 23 32 TRRAP 8295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 98497374 98497374 + Missense_Mutation SNP G G T TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TGCCATTCAGGTGTCTGCACA 0.438 15 28 FLNC 2318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 128482972 128482972 + Silent SNP G G A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CACCAGGGGCGGGCCGCTACA 0.592 20 34 PTPRD 5789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 8633423 8633423 + Silent SNP G G A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GTTGTATTCTGAGAACTGATC 0.428 24 15 KIF24 347240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 34256165 34256165 + Missense_Mutation SNP T T C rs36062910 TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TAGGTCTGCCTCCCTGCTGGG 0.572 17 24 TPM2 7169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 35685321 35685321 + Missense_Mutation SNP C C A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TCCAGGATCACCAGCTTCCTG 0.627 13 27 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu 37 9 84609437 84609437 + Missense_Mutation SNP G G T TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 AACCTTTTCAGAAAATGGATG 0.443 7 9 EIF1AX 1964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 20156713 20156713 + Missense_Mutation SNP C C A TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CTCATTCTTACCCCTGCGTCT 0.308 13 2 ATRX 546 hgsc.bcm.edu;broad.mit.edu 37 X 76855199 76855199 + Splice_Site SNP A A G TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TATTCGATTTACTTTGTATAA 0.348 6 1 CSMD2 114784 broad.mit.edu;ucsc.edu 37 1 34034977 34034977 + Missense_Mutation SNP G G A rs143459383 TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 CACTTACCAAGGCAGCGGACT 0.502 16 41 DIO2 1734 broad.mit.edu;ucsc.edu 37 14 80669148 80669148 + Missense_Mutation SNP G G C TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 GCAATTTTCTGTCTCTGCACA 0.507 23 25 OR2M3 127062 broad.mit.edu;hgsc.bcm.edu 37 1 248366912 248366912 + Frame_Shift_Del DEL C C - TCGA-DB-A4XB-01A-11D-A26M-08 TCGA-DB-A4XB-10A-01D-A26K-08 Untested Somatic Phase_I WXS none Illumina GAIIx 9aaf7e22-1669-4db1-b137-944ff01ddbdc 456815aa-07ae-46de-bf95-78b15569f6b1 TCTGTGACTTCCCCTCCCTAC 0.423 42 143