Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count FAM186B 84070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 49992644 49992644 + Missense_Mutation SNP A A G rs140386687 byFrequency TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CAGGCGGTCAATGTTTTCCAG 0.537 66 79 VRK1 7443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 97321577 97321577 + Missense_Mutation SNP A A G TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 TTGGTAGATTATGGCCTTGCT 0.393 78 106 TNFAIP2 7127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 103599762 103599762 + Missense_Mutation SNP C C T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CAGCAAGGGGCGCCTGGTCCT 0.622 43 59 TAT 6898 hgsc.bcm.edu;broad.mit.edu 37 16 71602180 71602180 + Missense_Mutation SNP T T C TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 ATTCGGGTACTCAAAGCACTG 0.502 3 63 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T rs28934576 by1000genomes TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 GGCACAAACACGCACCTCAAA 0.542 30 31 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578466 7578466 + Missense_Mutation SNP G G T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 GCGGACGCGGGTGCCGGGCGG 0.612 49 47 DSG4 147409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 28983444 28983444 + Missense_Mutation SNP C C T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 TGATTATTGTCCAAACATTTT 0.383 28 34 NUMBL 9253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41183289 41183289 + Missense_Mutation SNP G G C TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CAGGCAGGCGGCAAAAGCACA 0.697 18 27 ITPKC 80271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 41223412 41223412 + Silent SNP A A C TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 GGACGCATCTAGAATGGAGCT 0.607 42 80 LILRA2 11027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 55086405 55086405 + Missense_Mutation SNP C C T rs74454618 TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CCCGTGAGCCCGAGTCGCAGG 0.587 99 109 MYOM3 127294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 24419503 24419503 + Missense_Mutation SNP G G A TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 ACCATGTAGAGCCCCTCGTCC 0.637 19 20 ZCCHC11 23318 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 52889613 52889613 + Silent SNP C C T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CGCATTACTCCGACACGTTTC 0.507 16 19 FCRL3 115352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 157665373 157665373 + Missense_Mutation SNP G G T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 AGCCCTGAAGGTGAGGACAGG 0.557 24 47 FMO1 2326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 171254528 171254528 + Missense_Mutation SNP G G A TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 AGGAAAATGGGAAGGAGCCAG 0.502 41 69 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 ATAAGCATGACGACCTATGAT 0.393 40 66 IL17RC 84818 hgsc.bcm.edu;broad.mit.edu 37 3 9959040 9959040 + Missense_Mutation SNP G G A rs112532783 byFrequency TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 GCACTGGGCCGAAGCCCAGTG 0.657 6 91 HMGN3 9324 hgsc.bcm.edu;ucsc.edu 37 6 79944270 79944270 + Missense_Mutation SNP T T G TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 TACCTTTCTCTTCGGCATAAT 0.502 17 178 LINGO2 158038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 27950110 27950110 + Missense_Mutation SNP C C T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 TGTTAAGTTGCATTTCTCCAG 0.483 45 65 MYO10 4651 broad.mit.edu;ucsc.edu 37 5 16694555 16694555 + Missense_Mutation SNP C C T TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 CTTGGACTGGCGGAGGACAAA 0.567 24 179 LACC1 144811 broad.mit.edu;hgsc.bcm.edu 37 13 44455647 44455647 + Frame_Shift_Del DEL G G - TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 AGCACTGAGAGGAAAATTAAC 0.328 51 97 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76938749 76938765 + Frame_Shift_Del DEL GTCGCCTCAAGGGTGTA GTCGCCTCAAGGGTGTA - TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 GTTTCTGTCGGTCGCCTCAAGGGTGTAGTCTTTACAC 0.373 90 92 ATRX 546 hgsc.bcm.edu 37 X 76938765 76938765 + Silent SNP A A G TCGA-DB-5280-01A-01D-1468-08 TCGA-DB-5280-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ef91c83b-6752-418b-9ffe-68c5a518f96a f0f00150-b136-4274-a932-460ad5b990f7 TCAAGGGTGTAGTCTTTACAC 0.383 6 48