Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count SHOC2 8036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 112745430 112745430 + Missense_Mutation SNP C C A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCACAATCAACTTGAACACCT 0.368 9 97 MRVI1 10335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 10615122 10615122 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ACCACAGCAACGCTGACCCTC 0.517 30 35 HTR3A 3359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 11 113852031 113852031 + Missense_Mutation SNP A A T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CTCATCAATGAGTTGTGAGTA 0.512 25 34 MIPEP 4285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 24411745 24411745 + Missense_Mutation SNP T T C TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GCATGTCCCATTTCATGGAAA 0.438 60 207 FRY 10129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 32811758 32811758 + Missense_Mutation SNP C C G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCCTCAAAAACCAGAAGCTCA 0.537 16 35 NBEA 26960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 35923243 35923243 + Splice_Site SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TTTTCTTTTTAGATTACTGTG 0.313 17 42 TRPC4 7223 hgsc.bcm.edu;broad.mit.edu 37 13 38320234 38320234 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TTTGCACTGCCGTGACAGCTC 0.423 20 317 TJP1 7082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 30024898 30024898 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GCGGACAAATCCTCTCTGCTT 0.433 47 111 ZNF592 9640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 85326612 85326612 + Nonsense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GGATGCCACTCGATTCTTCGG 0.567 28 102 CIITA 4261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 10997737 10997737 + Nonsense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CCTGACCTCCCGAGCAAACAT 0.592 33 131 ITGAL 3683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 30530025 30530025 + Silent SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ATGGCAGCAACGCCTCCCTGG 0.612 13 53 TRPV3 162514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 3458040 3458040 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCTTTGTGGGGGTGATCTCCG 0.657 33 33 ABCC3 8714 hgsc.bcm.edu;broad.mit.edu 37 17 48741328 48741328 + Missense_Mutation SNP C C G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TTATCACCAACTCAGTCAAAC 0.587 10 104 ATP8B3 148229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 1785266 1785266 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GCCACGCACAGGGCGGTCCAG 0.607 4 17 SAFB2 9667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 5587939 5587939 + Missense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGCCAGGCGCGTGCCTGGTGC 0.662 5 16 MAG 4099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 35802842 35802842 + Silent SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CAGAGAGCCCCAGCTTCTCGG 0.607 15 2 ZNF546 339327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 40520711 40520711 + Missense_Mutation SNP C C G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCGCTATCATCTCACTCAACA 0.403 44 16 SLC17A7 57030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 49933845 49933845 + Silent SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CATAGGAGGGCGGGGGTGCAG 0.647 10 8 LRRC7 57554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 70504174 70504174 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CCCCTAGTCCGTTTGAAGACA 0.478 76 12 NUP210L 91181 hgsc.bcm.edu;ucsc.edu 37 1 154061934 154061934 + Missense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ACATGGCTGGGCACCAGCTGG 0.483 112 221 FCRL5 83416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 157491079 157491079 + Missense_Mutation SNP G G A rs142943534 TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GCGAGACACCGGAACTGAAAG 0.498 13 63 ATP1A2 477 hgsc.bcm.edu;broad.mit.edu 37 1 160093040 160093040 + Missense_Mutation SNP G G T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GTTCTGGCTCGAGATGGGCCC 0.642 17 133 NCF2 4688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 183543623 183543623 + Splice_Site SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TACGCTTACCCAGACACACTC 0.463 171 207 ESRRG 2104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 216824353 216824353 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CTTCATGAAGCGGCAAGCCTG 0.448 30 163 CYP24A1 1591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 52779339 52779339 + Missense_Mutation SNP A A T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TAAATGTCACAAAGGAAATCT 0.463 53 57 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu 37 22 38323452 38323452 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ACTCGGAGCCGCCCTCGGCCA 0.687 13 19 REG3G 130120 hgsc.bcm.edu;broad.mit.edu 37 2 79253917 79253917 + Missense_Mutation SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCCCCCTGCTATGCCTTGTTT 0.542 14 26 SPOPL 339745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 139308482 139308482 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GGTGCCTGAGGGTAAACCCAA 0.378 35 174 ITGA6 3655 hgsc.bcm.edu;ucsc.edu 37 2 173366600 173366600 + Missense_Mutation SNP A A T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CTTACTTCTGATGCATAGTAT 0.383 22 100 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ATAAGCATGACGACCTATGAT 0.393 65 71 SUMF1 285362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 4491010 4491010 + Silent SNP G G A rs148557574 TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CAAAGGAGTCGCCAAACTTCT 0.403 114 163 RBM6 10180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 50099412 50099412 + Silent SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCTATGTGCCCCAGGATCCTG 0.438 20 47 MCCC1 56922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 182759530 182759530 + Silent SNP T T C TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TCTTCTCTCCTGCTGCAATCT 0.403 92 129 LRCH3 84859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 3 197559180 197559180 + Missense_Mutation SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GTAGTAACAAACGGCGGAGGT 0.408 18 70 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 123192264 123192264 + Missense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GGAAAAGTCCGTGTGCACCCC 0.438 52 147 PIK3R1 5295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 67589138 67589138 + Missense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CAGGAAAGGGGGAAATAACAA 0.308 41 74 PCDHB3 56132 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140481839 140481839 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CGCCACAGACCGTGGCTCCCC 0.672 21 67 PCDHGA1 56114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 140711827 140711827 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGAGCAGTTCCGGGACATGCA 0.587 76 288 GRPEL2 134266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 148727842 148727842 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TAGGGGATGGCCGCTTCCATT 0.517 31 114 NEDD9 4739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 11190997 11190997 + Missense_Mutation SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CTGGAGAAAGACAATCGGTTG 0.547 62 64 PAQR8 85315 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 52268301 52268301 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGGGCCTTTGCCGAGGCTGAG 0.572 17 71 SIM1 6492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 100841631 100841631 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GTCTGTAGGCGCACGATGCGT 0.617 21 75 JAK2 3717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 5090496 5090496 + Nonsense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGGAAGTTTACGAGACTATCT 0.313 111 22 CKS2 1164 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 91926227 91926227 + Missense_Mutation SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f AAGCAGATCTACTACTCGGAC 0.642 16 20 RPL7A 6130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 136217156 136217156 + Silent SNP C C T rs142456845 by1000genomes TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGATTGCACACGACGTGGATC 0.522 9 40 MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu 37 X 140995929 140995929 + Silent SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f AAAAGGTGGACGAGTTGGCGC 0.488 12 200 SART1 9092 broad.mit.edu;ucsc.edu 37 11 65733982 65733982 + Silent SNP A A G TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CCCTGAGCACAGTGGGGCCCC 0.677 5 15 TPST2 8459 broad.mit.edu;ucsc.edu 37 22 26937282 26937282 + Silent SNP G G A rs146078388 byFrequency TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGGCCAGCACGCGCGGGATGA 0.706 7 25 SNHG14 104472715 broad.mit.edu;ucsc.edu 37 15 25444675 25444675 + RNA SNP C C A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ACGCTGAGGCCCAGCCTAGGT 0.493 75 231 GPX6 257202 broad.mit.edu;ucsc.edu 37 6 28472105 28472105 + Missense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f ACTCCAGGATGTCTGACTTGA 0.502 60 74 ENSA 2029 broad.mit.edu;ucsc.edu 37 1 150599964 150599964 + Silent SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GTCTCTTCATGAGGAAGTCGG 0.493 90 83 FSIP1 161835 broad.mit.edu;ucsc.edu 37 15 39910063 39910063 + Silent SNP C C T rs144527032 byFrequency TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f CAAGAGTCTTCGACATAAAAT 0.398 86 52 NEGR1 257194 broad.mit.edu;ucsc.edu 37 1 72748110 72748110 + Missense_Mutation SNP C C T TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f GCAGCACAGGCTGAGGAGCAC 0.627 5 17 SLA 6503 broad.mit.edu;ucsc.edu 37 8 134050855 134050855 + Nonsense_Mutation SNP G G A TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TTCTTCTTTCGATCAAAGGAG 0.498 67 210 ZCCHC9 84240 broad.mit.edu;hgsc.bcm.edu 37 5 80607067 80607070 + Frame_Shift_Del DEL AAAG AAAG - TCGA-DB-5279-01A-01D-1468-08 TCGA-DB-5279-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx 277aa1d8-ce6a-4e32-a267-73c33665ab97 1761720c-3e2f-4ce7-8551-b859117e150f TGGAACATTTAAAGAAAGATTGCC 0.417 190 348