Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count ZNF438 220929 hgsc.bcm.edu;broad.mit.edu 37 10 31138346 31138346 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GTGGTGGAGGGTATCTTATCA 0.463 24 234 MS4A7 58475 hgsc.bcm.edu;broad.mit.edu 37 11 60150653 60150653 + Silent SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TTTCTCACAGCTTTACACCAA 0.463 5 87 CACNA2D4 93589 hgsc.bcm.edu;ucsc.edu 37 12 2017054 2017054 + Silent SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TGTTGTACACGTTGGTGGGCA 0.627 8 90 RPAP3 79657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 48096531 48096531 + Nonsense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TGTCTTTTTCCCAGTTTTCTA 0.323 8 41 MBD6 114785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 57919602 57919602 + Missense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CACCCTGGTCCTGCCTCTCAG 0.672 7 24 SRGAP1 57522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 64437269 64437269 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATCAATTAAGGCACGGAACGA 0.348 42 9 NAP1L1 4673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 12 76453623 76453623 + Silent SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATTCTTCTTCCGTAGGTTCAT 0.308 44 20 TTLL5 23093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 76241856 76241856 + Silent SNP A A G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TCAAGCGAGCATCAAATAACC 0.463 130 175 ELL3 80237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 44068328 44068328 + Missense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CAGGACCAACCAGGGCCTGGG 0.632 31 44 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 48729544 48729544 + Silent SNP G G T rs112989722 TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CAGGTCCCACGATGATCCCAC 0.423 32 9 PELP1 27043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 4578457 4578457 + Silent SNP C C G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GGCGGCCGATCAGGATCCCAA 0.607 11 25 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7577574 7577574 + Missense_Mutation SNP T T C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GTTACACATGTAGTTGTAGTG 0.572 86 10 NCOR1 9611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 15974805 15974805 + Missense_Mutation SNP T T C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TAAAATATCTTGCCTTGGAAT 0.453 253 49 ACLY 47 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 40030158 40030158 + Nonsense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATGAGCTCCTGTCCTCGCTCA 0.592 22 89 LPO 4025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 56344812 56344812 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 AAGTTACTGGGTCTCTACGGG 0.572 65 65 ZNF750 79755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 80789719 80789719 + Silent SNP G G C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TCCAGGGGTAGCCAGGAGTGT 0.577 12 99 MATK 4145 hgsc.bcm.edu;broad.mit.edu 37 19 3784173 3784173 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CTCCCGCAGCGCCCCAGCTGC 0.682 22 27 SBSN 374897 hgsc.bcm.edu;broad.mit.edu 37 19 36015811 36015811 + Missense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CTGGAAGATCCGCTTTGATGG 0.612 8 26 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 22166420 22166420 + Missense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CCCGTGTCCACGATCACCTCC 0.587 112 181 NLRP3 114548 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 247582222 247582222 + Silent SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TCCCCCTCCCGAGGGGTCAGA 0.562 34 52 ZNF343 79175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 2464637 2464637 + Missense_Mutation SNP G G C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CACAAATAAGGCTTCTCTTCT 0.493 16 51 SNRPB2 6629 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 20 16712312 16712312 + Splice_Site SNP G G C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TTTTATAACAGATTTTTTACT 0.303 19 104 LIPI 149998 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 15561431 15561431 + Missense_Mutation SNP G G C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATAAATAAAAGTTGTAGCACC 0.363 52 66 DIP2A 23181 hgsc.bcm.edu;broad.mit.edu 37 21 47978201 47978201 + Silent SNP T T C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GGCCCAGGATTGCGCTGACCC 0.667 6 25 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 15555741 15555741 + Missense_Mutation SNP C C G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ACTAAATATTCTTTTAATAGC 0.368 87 108 VIT 5212 hgsc.bcm.edu;broad.mit.edu 37 2 37035632 37035632 + Silent SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GCAGAACAAACGGCTTCTACT 0.622 28 58 KIAA1841 84542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 61315601 61315601 + Silent SNP A A C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATATTCACATAAGGTGTCGTG 0.328 35 26 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113112 209113112 + Missense_Mutation SNP C C T rs121913500 TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ATAAGCATGACGACCTATGAT 0.393 21 60 SP100 6672 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 231314895 231314895 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 AGAGTCCTGCGAACAAATTGC 0.473 75 61 SPEF2 79925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 35709170 35709170 + Missense_Mutation SNP A A G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 AAGGAAATTCATCAAAGCCAT 0.418 21 147 MROH2B 133558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 41045922 41045922 + Missense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GTCCAGGCCACATCACTGATC 0.433 35 254 ANKHD1 54882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 139917069 139917069 + Nonsense_Mutation SNP C C T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GAGACTGGCCCGAATTCGGCA 0.552 54 8 CAPN11 11131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 44143869 44143869 + Missense_Mutation SNP C C G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CACGCTTACTCTGTGACTGGC 0.542 22 31 HTR1B 3351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 78172156 78172156 + Missense_Mutation SNP G G T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CACAATAAAGGCTCCCAAAAT 0.507 103 119 TPBG 7162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 83075656 83075656 + Silent SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GTGCATATCCGGAAAAAATGA 0.542 47 105 TRPV5 56302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 142626123 142626123 + Missense_Mutation SNP A A G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 TTACCCAGGGAGTCCTGGGCC 0.612 9 42 STARD8 9754 hgsc.bcm.edu;ucsc.edu 37 X 67937299 67937299 + Silent SNP G G T TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CCCCCAGCTCGAGTGACCGGC 0.642 4 26 GPR149 344758 broad.mit.edu;ucsc.edu 37 3 154145322 154145322 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CCCATCGGACGCCACTGCATA 0.488 35 5 CDH17 1015 broad.mit.edu;ucsc.edu 37 8 95142932 95142932 + Missense_Mutation SNP G G A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CCTGCTGGCCGGAAACAACTT 0.448 27 116 ADAM23 8745 broad.mit.edu;ucsc.edu 37 2 207310230 207310230 + Missense_Mutation SNP C C G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 AGGCAAGACACCAGCAAAAAC 0.398 40 95 NUMA1 4926 broad.mit.edu;ucsc.edu 37 11 71720101 71720101 + Missense_Mutation SNP T T C TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 CTGTAGCTCATGGCCCAGCCG 0.592 27 45 TRIM68 55128 broad.mit.edu;ucsc.edu 37 11 4626616 4626616 + Missense_Mutation SNP A A G TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 GAGTCCAGAGAGACAGCTGTG 0.572 42 23 CHD5 26038 broad.mit.edu;hgsc.bcm.edu 37 1 6202211 6202212 + Frame_Shift_Ins INS - - A TCGA-DB-5277-01A-01D-1468-08 TCGA-DB-5277-10A-01D-1468-08 Untested Somatic Phase_I WXS none Illumina GAIIx ff5b06bf-99d6-4276-8646-b91ef5ed480e 54fcd6db-49a2-47d2-9086-3f7b89e39015 ACCTTCTTCCCACTCCGAATGG 0.599 115 202