Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SESN3	143686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	94923103	94923103	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	TATTAAGTAAGAACACTGATG	0.328	20	61
LIMA1	51474	hgsc.bcm.edu;broad.mit.edu	37	12	50586281	50586281	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	GGAGGCTCTGGAATCTGGACT	0.458	8	107
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	130185090	130185090	+	Missense_Mutation	SNP	C	C	T			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	TGACTCCACCCGGGACTGCAG	0.547	27	64
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	by1000genomes	TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	GGCACAAACACGCACCTCAAA	0.542	35	11
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55607493	55607493	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	GCGCTCCTTGGACAAGTCCTG	0.657	14	83
SLC30A2	7780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26371659	26371659	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	CCAGGTCGGGGCAGAGGAATC	0.597	24	50
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	64515592	64515592	+	Silent	SNP	C	C	T	rs148616064		TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	ACTTCCAGTGCGTGGCAACAA	0.567	44	81
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	91818120	91818120	+	Silent	SNP	A	A	G			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	TGTACTCTTCAAACAGTCCTC	0.358	19	99
PGLYRP4	57115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	153313006	153313006	+	Missense_Mutation	SNP	G	G	C			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	TCCTGGGACAGTGGGTCTCCC	0.602	8	88
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	ATAAGCATGACGACCTATGAT	0.393	28	72
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	179016595	179016595	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	AGAACAGCAGCAGTTAAGAGA	0.353	25	48
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	109294621	109294621	+	Silent	SNP	T	T	C			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	ACAAACTCCATTGGGAAACAG	0.393	50	70
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	39091490	39091490	+	Silent	SNP	G	G	C			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	ATGGTGATGTGATTTATGCTT	0.368	8	16
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76939964	76939964	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	CAATACCATTGGTTGTTTTCA	0.393	146	59
SNED1	25992	broad.mit.edu;ucsc.edu	37	2	241969887	241969887	+	Missense_Mutation	SNP	G	G	A			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	CACGGAGGACGTCAGGCACTA	0.627	6	23
NEB	4703	broad.mit.edu;ucsc.edu	37	2	152406213	152406213	+	Silent	SNP	A	A	G			TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	CTGGAAGTCTATATCCAGTGG	0.488	4	22
GPR45	11250	broad.mit.edu;ucsc.edu	37	2	105858978	105858978	+	Silent	SNP	G	G	A	rs141451236		TCGA-DB-5273-01A-01D-1468-08	TCGA-DB-5273-10A-01D-1468-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	938f1aec-2069-4c76-8110-7f086b59e86b	54997159-244a-485c-a81f-e546b76046e8	TCCTCAACACGGTCCGCAAGA	0.677	23	58