Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ref_context gc_content t_alt_count t_ref_count TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578406 7578406 + Missense_Mutation SNP C C T rs28934578 TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f GTGGGGGCAGCGCCTCACAAC 0.652 28 62 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578467 7578467 + Missense_Mutation SNP T T G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CGGACGCGGGTGCCGGGCGGG 0.612 45 48 KRT33A 3883 hgsc.bcm.edu;broad.mit.edu 37 17 39502881 39502881 + Missense_Mutation SNP G G A rs148488457 TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f GAGCTGTAGCGGGCCTCGCTC 0.587 6 89 DCC 1630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 51025871 51025871 + Missense_Mutation SNP T T C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f ACCACTTTTGTCTCAGCCAGG 0.443 85 124 PTPN14 5784 hgsc.bcm.edu;broad.mit.edu 37 1 214625279 214625279 + Missense_Mutation SNP C C G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f ATCGTGCTTGCTGGCTCTTGC 0.458 9 134 KIF16B 55614 hgsc.bcm.edu;broad.mit.edu 37 20 16360692 16360692 + Missense_Mutation SNP C C T TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CTCCTGCTTGCGAATCTGGAG 0.522 12 199 PPP1R16B 26051 hgsc.bcm.edu;broad.mit.edu 37 20 37547124 37547124 + Missense_Mutation SNP G G A TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CAGCAGCATGGCCAGGACGGG 0.612 5 72 DSCAM 1826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 41496241 41496241 + Missense_Mutation SNP C C T TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TTCACACCCGCGGGAGGACCT 0.597 66 105 TMPRSS2 7113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 42845269 42845269 + Silent SNP G G A TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CGCAGTGGGCGGCTGTCACGA 0.692 7 9 REL 5966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 61149057 61149057 + Missense_Mutation SNP C C T TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TCATCAGTGGCCCACCCCACC 0.502 10 84 DYNC1I2 1781 hgsc.bcm.edu;broad.mit.edu 37 2 172586272 172586272 + Missense_Mutation SNP T T C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f ATCACTGGCATCCATTGTCAT 0.398 10 141 NBEAL1 65065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 204003429 204003429 + Missense_Mutation SNP G G C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CTCAAATTCAGATCCAGTTGC 0.373 24 246 NDUFS1 4719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 206991481 206991481 + Missense_Mutation SNP C C G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CCTTCAATATCATCATATCGA 0.393 18 181 IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TAAGCATGACGACCTATGATG 0.398 53 76 VIL1 7429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 219299321 219299321 + Missense_Mutation SNP G G A TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f GGGAACTGGCGCCAACAACAC 0.572 68 81 MAB21L2 10586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 151505024 151505024 + Missense_Mutation SNP G G C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TGCTGTACGAGTGCGAGAAAC 0.627 8 73 CTSO 1519 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 156847189 156847189 + Nonstop_Mutation SNP C C G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CCCAACATGTCACACAAATAT 0.308 9 29 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 13769245 13769245 + Splice_Site SNP C C G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TCTTTTAAGACCTAATTCAAT 0.413 68 235 KIAA0825 285600 hgsc.bcm.edu;broad.mit.edu 37 5 93856210 93856210 + Missense_Mutation SNP T T G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f AGCTATTACATCTAAATTTGA 0.308 6 80 LRRC16A 55604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 25606448 25606448 + Missense_Mutation SNP G G C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CCCAAACCCAGTCTGGCAGCA 0.592 8 23 CLIC1 1192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 31698750 31698750 + Missense_Mutation SNP T T C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f GCCTCGGGGATGGTGAATCCC 0.582 20 38 BTNL2 56244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 32370727 32370727 + Missense_Mutation SNP C C T rs79379254 TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f AGGCTGATGACCGACCCCTTC 0.582 24 24 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 87183089 87183089 + Silent SNP T T C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TGAGTACTTGTCCAATAGAAT 0.378 49 67 TAS2R4 50832 hgsc.bcm.edu;broad.mit.edu 37 7 141478489 141478489 + Missense_Mutation SNP C C G TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f TGAACACCATCTACTTCGTCT 0.443 20 258 PLAA 9373 hgsc.bcm.edu;broad.mit.edu 37 9 26905915 26905915 + Missense_Mutation SNP C C T TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f GCAAAAAGTCCTGAGAGCAAG 0.458 6 64 AGPAT3 56894 broad.mit.edu;ucsc.edu 37 21 45379705 45379705 + Missense_Mutation SNP G G A TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CTCTACCGCCGCCTCAACTGC 0.667 5 34 PURG 29942 broad.mit.edu;ucsc.edu 37 8 30889490 30889490 + Missense_Mutation SNP T T C TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f CCTTTTATTGTCCACTCTGAA 0.438 58 59 ATRX 546 broad.mit.edu;hgsc.bcm.edu 37 X 76919037 76919038 + Frame_Shift_Ins INS - - T TCGA-CS-6666-01A-11D-1893-08 TCGA-CS-6666-10A-01D-1893-08 Untested Somatic Phase_I WXS none Illumina GAIIx 3b1a392f-8886-4946-8f84-1f4e5d5be873 97f96259-12a3-4d78-8f41-9770ef96748f AATTGACTTGATTTTTTGCTTC 0.351 21 3