Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
GPR114	221188	hgsc.bcm.edu;ucsc.edu	37	16	57601804	57601804	+	Missense_Mutation	SNP	C	C	A	rs146006750		TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	TCCACATGAACCTGCATGCCT	0.612	5	44
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577539	7577539	+	Missense_Mutation	SNP	G	G	A	rs121912651		TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	ATGGGCCTCCGGTTCATGCCG	0.577	86	21
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	6686853	6686853	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	TAGGATCTCTGTAGGTTCATG	0.512	21	127
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	51518742	51518742	+	Silent	SNP	G	G	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	CAGGGTAGAAGACCTCACACT	0.552	124	258
ANXA9	8416	hgsc.bcm.edu;broad.mit.edu	37	1	150955565	150955565	+	Splice_Site	SNP	G	G	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	TCCTTCCCCAGGGCAACCAGT	0.622	6	77
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	1499888	1499888	+	Missense_Mutation	SNP	G	G	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	CTTCCAAGTCGGCAAATTCCC	0.562	10	51
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	ATAAGCATGACGACCTATGAT	0.393	29	52
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	189705423	189705423	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	AGAAGATAGGCTTTGGCACAC	0.468	30	106
FGF5	2250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	81207632	81207632	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	GTGCAGCCCCCGGGTTAAACC	0.463	49	101
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	111441429	111441429	+	Missense_Mutation	SNP	C	C	G			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	ATGGGTTATCCTGTGCTTAAC	0.428	34	44
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	123336616	123336616	+	Silent	SNP	A	A	T			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	CAAAACTTCCAATGTTTTACT	0.378	70	116
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu	37	4	164393959	164393959	+	Missense_Mutation	SNP	G	G	C			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	taagcaggtggggaggtcatt	0.408	14	228
ADAM22	53616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	87757957	87757957	+	Missense_Mutation	SNP	A	A	G			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	GAAACCAAATACATTGAACTG	0.403	16	146
JHDM1D	80853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	139824520	139824520	+	Missense_Mutation	SNP	T	T	G			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	ACAGATGAACTCCAAGATTCA	0.358	18	33
ACTRT1	139741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	127186136	127186136	+	Missense_Mutation	SNP	C	C	A			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	GAGTCCTGAACCATTGTCAAA	0.433	40	68
ZNF185	7739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	152083048	152083048	+	Silent	SNP	T	T	C			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	GTATCTCAGCTCTTGGAGGCC	0.547	8	7
TTLL7	79739	broad.mit.edu;ucsc.edu	37	1	84356051	84356051	+	Silent	SNP	T	T	C			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	GACTCCAGAGTAAGCGATTAA	0.378	29	33
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939674	76939674	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CS-4938-01B-11D-1893-08	TCGA-CS-4938-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d2ec659e-22b1-4ff3-ad03-770c74414e05	4db52c00-aa66-48f7-b32b-1c2ec0dec7f5	TCTCAATCAGTTTTTTTGCCT	0.368	100	143