Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
HSP90B3P	0	genome.wustl.edu	36	1	91881176	91881176	+	Silent	SNP	T	T	C			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	1	91881176	91881176	T	C	SNP	HSP90B3P	ENST00000370405	human	ensembl	54_36p	+1	known	silent	c.615	p.T205	0.990	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors	1531	0	0.00	1050	690	39.66	121	0	0.00
DDR2	0	genome.wustl.edu	36	1	160997642	160997642	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	1	160997642	160997642	G	A	SNP	DDR2	NM_001014796.1	human	genbank	54_36p	+1	reviewed	missense	c.873	p.M291I	1.000	NULL	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,PatternScan_PROTEIN_KINASE_TYR,superfamily_Gal_bind_like,superfamily_Kinase_like	-	no_errors	1484	1	0.07	1076	845	43.99	NA	NA	NA
SHQ1	0	genome.wustl.edu	36	3	72949148	72949148	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	3	72949148	72949148	G	C	SNP	SHQ1	NM_018130.2	human	genbank	54_36p	-1	validated	missense	c.805	p.R269G	0.063	HMMPfam_SHQ1	HMMPfam_SHQ1,superfamily_HSP20_chap,HMMPfam_CS	-	no_errors	1359	0	0.00	892	555	38.36	14	10	41.67
COL11A2	0	genome.wustl.edu	36	6	33259973	33259973	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	6	33259973	33259973	C	T	SNP	COL11A2	NM_080680.2	human	genbank	54_36p	-1	reviewed	missense	c.1046	p.G349D	0.999	NULL	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00282,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors	663	0	0.00	195	117	37.38	NA	NA	NA
SEPT14	0	genome.wustl.edu	36	7	55869714	55869714	+	Silent	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	7	55869714	55869714	C	T	SNP	SEPT14	NM_207366.2	human	genbank	54_36p	-1	validated	silent	c.618	p.T206	0.808	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	873	0	0.00	837	551	39.70	0	0	0.00
PPP1R9A	0	genome.wustl.edu	36	7	94717425	94717425	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	A	A	A	G	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	7	94717425	94717425	A	G	SNP	PPP1R9A	NM_017650.2	human	genbank	54_36p	+1	validated	missense	c.2252	p.K751R	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors	1282	1	0.08	827	575	40.98	NA	NA	NA
HTR5A	0	genome.wustl.edu	36	7	154493826	154493826	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	G	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	7	154493826	154493826	C	G	SNP	HTR5A	NM_024012.2	human	genbank	54_36p	+1	reviewed	missense	c.284	p.P95R	0.994	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	584	0	0.00	378	248	39.62	NA	NA	NA
ABL1	0	genome.wustl.edu	36	9	132750251	132750251	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	9	132750251	132750251	C	T	SNP	ABL1	NM_007313.3	human	genbank	54_36p	+1	reviewed	missense	c.2810	p.P937L	0.837	NULL	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_F_actin_bind,HMMSmart_SM00808,PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors	380	0	0.00	298	207	40.75	18	14	43.75
UNC5B	0	genome.wustl.edu	36	10	72725661	72725661	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	10	72725661	72725661	C	T	SNP	UNC5B	NM_170744.3	human	genbank	54_36p	+1	validated	missense	c.2263	p.R755C	1.000	NULL	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors	955	0	0.00	363	259	41.64	1	1	50.00
GDPD4	0	genome.wustl.edu	36	11	76659860	76659860	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	11	76659860	76659860	C	T	SNP	GDPD4	NM_182833.1	human	genbank	54_36p	-1	provisional	nonsense	c.363	p.W121*	0.997	NULL	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	1967	1	0.05	1189	862	42.01	0	0	0.00
MAGEL2	0	genome.wustl.edu	36	15	21441341	21441341	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	15	21441341	21441341	C	T	SNP	MAGEL2	NM_019066.3	human	genbank	54_36p	-1	validated	missense	c.833	p.R278H	0.002	NULL	HMMPfam_MAGE	-	no_errors	276	0	0.00	584	304	34.16	NA	NA	NA
MEGF11	0	genome.wustl.edu	36	15	63977422	63977422	+	Silent	SNP	G	G	A			TCGA-AB-2999-03A-01D-0739-09	TCGA-AB-2999-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	1111edc5-c274-453b-88b4-a992ac879d74	3357e03b-0ffd-40ac-acd4-4806dff7d769	15	63977422	63977422	G	A	SNP	MEGF11	NM_032445.2	human	genbank	54_36p	-1	validated	silent	c.2814	p.Y938	1.000	NULL	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF57196	-	no_errors	836	0	0.00	619	174	21.94	NA	NA	NA