Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
BTBD8	0	genome.wustl.edu	36	1	92385369	92385369	+	Silent	SNP	T	T	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	T	T	T	A	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	1	92385369	92385369	T	A	SNP	BTBD8	NM_183242.3	human	genbank	54_36p	+1	validated	silent	c.975	p.I325	1.000	NULL	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	-	no_errors	608	9	1.46	895	505	36.07	2	1	33.33
ZC3H8	0	genome.wustl.edu	36	2	112710625	112710625	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	2	112710625	112710625	G	A	SNP	ZC3H8	NM_032494.2	human	genbank	54_36p	-1	validated	silent	c.489	p.S163	0.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors	1187	34	2.78	1246	642	33.99	5	6	54.55
ODZ2	0	genome.wustl.edu	36	5	167621693	167621693	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	5	167621693	167621693	G	T	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	+1	known	missense	c.7622	p.G2541V	1.000	NULL	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_RHS_repeat,superfamily_Carboxypeptidase regulatory domain,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_NHL repeat,superfamily_EGF/Laminin	-	no_errors	1844	54	2.84	969	553	36.29	NA	NA	NA
MLIP	0	genome.wustl.edu	36	6	54097557	54097557	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	6	54097557	54097557	G	A	SNP	C6orf142	NM_138569.2	human	genbank	54_36p	+1	validated	missense	c.547	p.D183N	0.239	NULL	NULL	-	no_errors	1236	13	1.04	1051	553	34.48	NA	NA	NA
ARHGAP39	0	genome.wustl.edu	36	8	145743702	145743702	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	C	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	8	145743702	145743702	G	C	SNP	KIAA1688	NM_025251.1	human	genbank	54_36p	-1	validated	missense	c.1576	p.Q526E	0.411	NULL	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_MyTH4,HMMSmart_SM00139,HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain,superfamily_GTPase activation domain GAP	-	no_errors	176	4	2.22	149	59	28.37	NA	NA	NA
ZNF34	0	genome.wustl.edu	36	8	145974246	145974246	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	8	145974246	145974246	G	A	SNP	ZNF34	NM_030580.3	human	genbank	54_36p	-1	validated	silent	c.204	p.Y68	0.090	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	777	18	2.26	565	320	36.16	3	3	50.00
PNPLA7	0	genome.wustl.edu	36	9	139478661	139478661	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	9	139478661	139478661	G	A	SNP	PNPLA7	NM_001098537.1	human	genbank	54_36p	-1	validated	silent	c.3108	p.A1036	0.336	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like,superfamily_cAMP-binding domain-like	-	no_errors	316	3	0.94	139	82	36.94	8	4	33.33
SOX5	0	genome.wustl.edu	36	12	23580673	23580673	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	12	23580673	23580673	G	A	SNP	SOX5	NM_006940.4	human	genbank	54_36p	-1	reviewed	missense	c.1969	p.R657W	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box,PatternScan_TONB_DEPENDENT_REC_1	-	no_errors	781	26	3.22	1133	368	24.52	NA	NA	NA
SCARB1	0	genome.wustl.edu	36	12	123868089	123868089	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	12	123868089	123868089	C	T	SNP	SCARB1	NM_005505.1	human	genbank	54_36p	-1	validated	missense	c.244	p.E82K	0.995	HMMPfam_CD36	HMMPfam_CD36	-	no_errors	1377	11	0.79	703	379	35.00	14	3	17.65
NUBP2	0	genome.wustl.edu	36	16	1776558	1776558	+	Silent	SNP	C	C	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	16	1776558	1776558	C	T	SNP	NUBP2	NM_012225.2	human	genbank	54_36p	+1	validated	silent	c.36	p.G12	0.837	superfamily_SSF52540	PatternScan_MRP,HMMPfam_ParA,superfamily_SSF52540	-	no_errors	205	5	2.38	127	88	40.93	13	11	45.83
LOC100128371	0	genome.wustl.edu	36	16	31414446	31414446	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	16	31414446	31414446	T	C	SNP	LOC100128371	XM_001725757.1	human	genbank	54_36p	-1	model	missense	c.250	p.T84A	0.004	NULL	NULL	-	no_errors	1471	22	1.47	620	347	35.85	0	1	100.00
HYDIN	0	genome.wustl.edu	36	16	69535291	69535291	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	16	69535291	69535291	G	A	SNP	HYDIN	NM_032821.2	human	genbank	54_36p	-1	validated	silent	c.6591	p.V2197	0.016	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	948	11	1.14	1795	493	21.53	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506255	27506256	+	In_Frame_Ins	INS	-	-	ATCATATTCATATTCTCTGAA			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	-	-	-	ATCATATTCATATTCTCTGAA	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	679dce85-9fdc-4864-876b-189e068c0e2e	b4be30b8-0ab5-4acc-8259-2aef68c178be	13	27506255	27506256	-	ATCATATTCATATTCTCTGAA	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1801_1800	p.600in_frame_insFREYEYD	1.000:0.998	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA