Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
RBM41	0	genome.wustl.edu	36	X	106197570	106197570	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	A	A	A	C	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	X	106197570	106197570	A	C	SNP	RBM41	NM_018301.2	human	genbank	54_36p	-1	provisional	missense	c.1085	p.I362R	0.636	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors	620	42	6.34	693	539	43.75	21	0	0.00
FRMPD3	0	genome.wustl.edu	36	X	106728014	106728014	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	X	106728014	106728014	C	A	SNP	FRMPD3	XM_042978.1	human	genbank	54_36p	+1	model	missense	c.2348	p.P783H	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors	911	64	6.56	620	593	48.89	NA	NA	NA
GLRA1	0	genome.wustl.edu	36	5	151284287	151284287	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	5	151284287	151284287	G	A	SNP	GLRA1	NM_000171.3	human	genbank	54_36p	-1	reviewed	missense	c.17	p.T6I	1.000	NULL	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors	1322	76	5.43	852	609	41.68	NA	NA	NA
POU6F2	0	genome.wustl.edu	36	7	39345840	39345840	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	7	39345840	39345840	C	T	SNP	POU6F2	NM_007252.2	human	genbank	54_36p	+1	validated	nonsense	c.586	p.Q196*	0.001	NULL	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains	-	no_errors	415	13	3.03	223	187	45.39	NA	NA	NA
RAD21	0	genome.wustl.edu	36	8	117938741	117938741	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	A	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	8	117938741	117938741	C	A	SNP	RAD21	NM_006265.2	human	genbank	54_36p	-1	reviewed	nonsense	c.634	p.E212*	1.000	NULL	HMMPfam_Rad21_Rec8,HMMPfam_Rad21_Rec8_N	-	no_errors	788	20	2.48	590	413	41.09	46	1	2.13
OR51S1	0	genome.wustl.edu	36	11	4826821	4826821	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	11	4826821	4826821	C	T	SNP	OR51S1	NM_001004758.1	human	genbank	54_36p	-1	provisional	missense	c.194	p.R65H	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_SPASE_I_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	2114	101	4.55	1045	810	43.32	NA	NA	NA
LOC644992	0	genome.wustl.edu	36	11	13588724	13588724	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	T	T	T	C	T	T	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	11	13588724	13588724	T	C	SNP	LOC644992	XM_932569.1	human	genbank	54_36p	-1	model	missense	c.106	p.R36G	0.983	HMMPfam_HMG14_17,HMMSmart_SM00527	HMMPfam_HMG14_17,HMMSmart_SM00527	-	no_errors	709	40	5.34	426	391	47.86	NA	NA	NA
KRT79	0	genome.wustl.edu	36	12	51502047	51502047	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	12	51502047	51502047	C	T	SNP	KRT79	NM_175834.2	human	genbank	54_36p	-1	validated	missense	c.1484	p.G495E	0.055	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors	803	64	7.37	272	234	46.25	NA	NA	NA
RNASE9	0	genome.wustl.edu	36	14	20095006	20095006	+	Silent	SNP	C	C	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	14	20095006	20095006	C	T	SNP	RNASE9	NM_001001673.3	human	genbank	54_36p	-1	provisional	silent	c.63	p.L21	0.000	NULL	superfamily_RNase A-like	-	no_errors	572	33	5.45	458	370	44.58	NA	NA	NA
CTSG	0	genome.wustl.edu	36	14	24113801	24113801	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	G	G	G	T	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	14	24113801	24113801	G	T	SNP	CTSG	NM_001911.2	human	genbank	54_36p	-1	reviewed	missense	c.259	p.Q87K	0.994	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	1179	34	2.80	913	778	45.98	133	135	50.19
ENSG00000210408	0	genome.wustl.edu	36	14	83286553	83286553	+	RNA	SNP	G	G	A			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	G	G	G	A	G	G	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	14	83286553	83286553	G	A	SNP	ENSG00000210408	ENST00000387673	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.971	-	-	-	pseudogene	658	41	5.87	519	408	44.01	NA	NA	NA
FLRT2	0	genome.wustl.edu	36	14	85159164	85159164	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	A	A	A	T	A	A	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	14	85159164	85159164	A	T	SNP	FLRT2	NM_013231.4	human	genbank	54_36p	+1	reviewed	missense	c.1553	p.Y518F	0.501	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRRCT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,superfamily_SSF52058	-	no_errors	654	40	5.75	464	360	43.64	NA	NA	NA
NAE1	0	genome.wustl.edu	36	16	65414670	65414670	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	T	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	16	65414670	65414670	C	T	SNP	NAE1	NM_003905.1	human	genbank	54_36p	-1	reviewed	missense	c.362	p.C121Y	1.000	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins	HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins	-	no_errors	158	10	5.95	257	152	37.16	29	19	39.58
NPM1	0	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CCTG			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	-	-	-	CCTG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	5	170770152	170770153	-	CCTG	INS	NPM1	NM_002520.1	human	genbank	54_36p	+1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
FLT3	0	genome.wustl.edu	36	13	27506263	27506264	+	In_Frame_Ins	INS	-	-	CATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	-	-	-	CATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG	-	-	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	13	27506263	27506264	-	CATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGG	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1793_1792	p.598in_frame_insAGSSDNEYFYVDFREY	0.821:0.816	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors	NA	NA	NA	NA	NA	NA	NA	NA	NA
LOC388276	0	genome.wustl.edu	36	16	50643274	50643274	+	RNA	DEL	C	C	-			TCGA-AB-2986-03A-01D-0739-09	TCGA-AB-2986-11A-01D-0739-09	C	C	C	-	C	C	Verified	Valid	Somatic	Phase_IV	WXS	Hybrid_Capture_Illumina_Seq	1	dbGAP	Illumina HiSeq	f389f28b-93c3-460a-9dcf-9f09d253b4be	d6e1248c-8bb3-4040-a0d2-c010edc8e56d	16	50643274	50643274	C	-	DEL	LOC388276	XR_041361.1	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.001	-	-	-	no_errors	1325	49	3.54	955	618	36.81	0	0	0.00